@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0675: (2016-03-17 )
MEAYKIEHLNKSYADKTIFDNLDLSISEGEKIGLVGINGTGKSTLLKVIGGIDDDFTANVMHPNQYRIRYSSQKQDLNEDMTVFDAVLSSDTTTLRIIKQYEQAVQAYADDQSDKLFKRMIDAQDAMDQHDAWDYNAEIKTILSKLGIHDTTKYIKELSGGQQKRVVLAKTLIEQPDLLLLDEPTNHLDFESISWLINYVKQYPHTVLFVTHDRYFLNEVSTRIIELNRGKLASYPGNYESYIEMRAEREVTLQKQQQKQRALYKEELAWMRAGAKARTTKQQARINRFNDLENEVNQQYKDDKGELNLAYSRLGKQVFELEDLSKAINDKVLFEHLTEIIQKGERIGVVGPNGAGKTTLLNILSGEDQQFEGKLKTGQTVKVAYFKQTDETLDRDIRMIDYLREESEVAKEKDGTSVSITQLLERFLFPSATHGKKVYKLSGGEQKRLYLLRLLVHQPNVLLLDEPTNDLDTETLTILEDYIHTFGGTVITVSHDRYFLNKVAQSYWFIHDGQMEKIIGTFEDYESYKKSLDKNKSTLKQQSKSYTTVRKKNGLSYKEKLEYEQLMKRIEQAEVRMEEIDVLMIEASADYGKIKELNEEKEQLEIQYDLDITRWSELEEIKEQQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_C_3(1VCI)
?
[Raw transfer]



ADP_A_5(1YQT)
?
[Raw transfer]
2 PsiBlast_PDB 91.4837% -70 - C1 -4FIN - ETTA_ECOLI -
1 PsiBlast_PDB 90.8737% -53 - C1 -3J5S - ETTA_ECOLI -
35 HHSearch 78.3828% -74 - C- -2IW3 - EF3A_YEAST -
39 HHSearch 66.1121% -58 - C1 -3OZX - ? -
38 HHSearch 63.4024% -50 - C1 -1YQT - ? -
11 PsiBlast_PDB 61.4425% -46 - C1 -3BK7 - ? -
36 HHSearch 61.1423% -48 - C1 -3BK7 - ? -
49 HHSearch 60.3523% -65 - C1 -1V43 - ? -
56 HHSearch 60.3227% -70 - C1 -3RLF - MALK_ECOLI -
10 PsiBlast_PDB 59.8425% -38 - C1 -3J15 - ? -
37 HHSearch 59.4820% -45 - C1 -3J16 - RLI1_YEAST -
9 PsiBlast_PDB 59.0726% -35 - C1 -1YQT 4.7 ?
41 HHSearch 59.0423% -51 - C1 -2R6F - ? -
5 PsiBlast_PDB 58.2327% -48 - C1 -2IW3 - EF3A_YEAST -
57 HHSearch 58.1629% -73 - C1 -1Z47 - ? -
45 HHSearch 57.6627% -56 - C1 -1Z47 - ? -
28 Fugue 57.2618% -30 - C1 -3J16 - RLI1_YEAST -
3 PsiBlast_PDB 56.6227% -43 - C1 -2IWH - EF3A_YEAST -
53 HHSearch 56.3424% -63 - C1 -2YYZ - ? -
44 HHSearch 56.2124% -47 - C1 -1OXX - ? -