@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0677: (2016-03-17 )
MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYFKDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLDMVGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIELQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHLEDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQPIEVLYQHLSESERVIVMQEDSVGQYVIDRKDIFKYLSQKKEVAQHD

Atome Classification :

(44 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_J_5(4YMU)
?
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_B_5(4QC2)
?
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ANP_J_5(3C41)
?
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ATP_A_3(4QC2)
?
[Raw transfer]




ADP_B_5(4P32)
LPTB_ECOLI
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]




109 HHSearch 87.0846%-114 - C1 -1V43 - ? -
1 PsiBlast_PDB 86.0045%-106 - C1 -1VCI - ? -
2 PsiBlast_PDB 85.2345%-108 - C1 -1V43 - ? -
5 PsiBlast_PDB 83.1743%-102 - C1 -2D62 - ? -
25 PsiBlast_CBE 80.2039%-104 - C1 -3PUZ - MALK_ECOLI -
12 PsiBlast_PDB 79.6939% -99 - C1 -3PUY - MALK_ECOLI -
15 PsiBlast_PDB 79.6539%-100 - C1 -3PUV - MALK_ECOLI -
108 HHSearch 79.6141%-102 - C1 -1Z47 - ? -
17 PsiBlast_PDB 79.5939% -99 - C1 -3PUX - MALK_ECOLI -
22 PsiBlast_CBE 78.7839% -95 - C1 -4KI0 - ? -
28 PsiBlast_CBE 78.7439% -95 - C1 -3PUW - MALK_ECOLI -
81 PsiBlast_CBE 78.4134% -98 - C1 -3FVQ 7.4 FBPC_NEIG1
3 PsiBlast_PDB 78.3841%-110 - C1 -4TQU - ? -
40 PsiBlast_CBE 78.3441%-100 - C1 -1Z47 - ? -
27 PsiBlast_CBE 78.0439% -96 - C1 -3PUX - MALK_ECOLI -
26 PsiBlast_CBE 78.0439% -99 - C1 -3PUY - MALK_ECOLI -
24 PsiBlast_CBE 78.0139% -94 - C1 -3RLF - MALK_ECOLI -
18 PsiBlast_PDB 77.9739% -96 - C1 -3RLF - MALK_ECOLI -
82 PsiBlast_CBE 77.8834% -98 - C1 -3FVQ 6.9 FBPC_NEIG1
29 PsiBlast_CBE 77.7239% -94 - C1 -3PUV - MALK_ECOLI -
113 HHSearch 74.2633% -97 - C1 -3FVQ 6.9 FBPC_NEIG1
89 PsiBlast_CBE 69.5333% -95 - C1 -1B0U 5.9 HISP_SALTY
61 PsiBlast_CBE 66.5236% -88 - C1 -3C4J 5.4 ?
79 PsiBlast_CBE 66.3734% -91 - C1 -4YMU 5.8 ?
69 PsiBlast_CBE 64.9636% -79 - C1 -2OLK 6.1 ?
78 PsiBlast_CBE 64.7034% -93 - C1 -4YMV 6.1 ?
80 PsiBlast_CBE 64.6534% -92 - C1 -4YMU 5.7 ?
77 PsiBlast_CBE 64.6034% -91 - C1 -4YMV 4.8 ?
74 PsiBlast_CBE 64.4436% -83 - C1 -2OLJ 6.2 ?
58 PsiBlast_CBE 64.2035% -98 - C1 -4U00 6.2 ?
59 PsiBlast_CBE 63.7236% -85 - C1 -3C41 6.2 ?
62 PsiBlast_CBE 63.7136% -77 - C1 -3C4J 6.7 ?
70 PsiBlast_CBE 62.8736% -85 - C1 -2OLK 6.4 ?
83 PsiBlast_CBE 62.5634% -97 - C1 -4MKI 2.2 ECFA2_CALS4
84 PsiBlast_CBE 62.5334% -98 - C1 -4MKI 2.0 ECFA2_CALS4
71 PsiBlast_CBE 60.9236% -81 - C1 -2OLK 6.2 ?
60 PsiBlast_CBE 60.5636% -78 - C1 -3C41 7.1 ?
72 PsiBlast_CBE 60.5336% -84 - C1 -2OLK 6.5 ?
73 PsiBlast_CBE 60.2136% -80 - C1 -2OLJ 5.7 ?
64 PsiBlast_CBE 60.0736% -76 - C1 -2Q0H 5.6 ?
87 PsiBlast_CBE 55.0531% -97 - C1 -4QC2 7.5 ?
85 PsiBlast_CBE 54.3431%-103 - C1 -4P32 6.3 LPTB_ECOLI
88 PsiBlast_CBE 54.2531% -99 - C1 -4QC2 7.2 ?
86 PsiBlast_CBE 52.7231%-104 - C1 -4P32 5.9 LPTB_ECOLI