@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0713: (2016-03-18 )
MTMVEHYPFKIHSDFEPQGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FLQ_C_5(2FDC)
UVRB_BACCA
[Raw transfer]



NACID_C_1(2FDC)
UVRB_BACCA
[Raw transfer]
-
NACID_D_2(2FDC)
UVRB_BACCA
[Raw transfer]
-
NACID_D_1(2NMV)
?
[Raw transfer]
-
NACID_D_1(2D7D)
UVRB_BACSU
[Raw transfer]
-
NACID_D_1(2D7D)
UVRB_BACSU
[Raw transfer]
-
CHAIN_C_3(3V4R)
?
[Raw transfer]
-
CHAIN_D_4(3V4R)
UVRB_BACSU
[Raw transfer]
-
47 HHSearch 91.3678% -93 - C3 -2D7D 8.8 UVRB_BACSU
1 PsiBlast_PDB 90.9178% -94 - C3 -2D7D 8.8 UVRB_BACSU
2 PsiBlast_PDB 90.0978% -93 - C3 -2NMV 7.6 ?
23 PsiBlast_CBE 89.5776% -95 - C3 -1T5L - UVRB_BACCA -
6 PsiBlast_PDB 89.3776% -94 - C3 -1T5L - UVRB_BACCA -
5 PsiBlast_PDB 87.9676% -93 - C3 -3UWX - ? -
21 PsiBlast_CBE 87.5478% -98 - C3 -3V4R 13.7 ?
3 PsiBlast_PDB 87.2778% -98 - C3 -3V4R 10.6 UVRB_BACSU
22 PsiBlast_CBE 87.0076% -96 - C3 -2FDC 18.3 UVRB_BACCA
71 Fugue 85.7578% -84 - C3 -1D9X - UVRB_BACCA -
8 PsiBlast_PDB 84.4676% -83 - C3 -1D9X - UVRB_BACCA -
7 PsiBlast_PDB 83.8076% -82 - C3 -1D9Z - UVRB_BACCA -
4 PsiBlast_PDB 79.2376% -86 - C3 -2FDC 12.4 UVRB_BACCA
70 Fugue 78.6759% -80 - C3 -1D2M - UVRB_THET8 -
72 Fugue 67.3379% -85 - C3 -1D9X - UVRB_BACCA -
75 Fugue 49.0619% -52 - C3 -2EYQ - MFD_ECOLI -
74 Fugue 45.2217% -62 - C3 -3HJH - MFD_ECOLI -
49 HHSearch 43.5017% -61 - C3 -3HJH - MFD_ECOLI -
73 Fugue 42.1466% -46 - C3 -1D9X - UVRB_BACCA -
9 PsiBlast_PDB 41.2679% -99 - C3 -3FPN - ? -