@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0719: (2016-03-18 )
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_B_7(3F8R)
?
[Raw transfer]



NAP_C_9(3F8R)
?
[Raw transfer]



NDP_B_6(4A65)
?
[Raw transfer]



NDP_B_6(4A5L)
?
[Raw transfer]



NDP_B_9(4CBQ)
?
[Raw transfer]



NAP_D_11(3F8R)
?
[Raw transfer]



NDP_A_3(4CBQ)
?
[Raw transfer]



NAP_B_7(4CCQ)
?
[Raw transfer]



NDP_B_6(4UP3)
?
[Raw transfer]



NAP_A_4(4CCQ)
?
[Raw transfer]



NDP_A_4(4UP3)
?
[Raw transfer]



GOL_A_19(4YKG)
?
[Raw transfer]



FAD_B_8(4GCM)
TRXB_STAAW
[Raw transfer]



FAD_A_3(2Q7V)
?
[Raw transfer]



FAD_B_4(2Q7V)
?
[Raw transfer]



FDA_A_2(4JNQ)
?
[Raw transfer]



ACY_B_9(3F8P)
?
[Raw transfer]



FAD_C_3(1TRB)
TRXB_ECOLI
[Raw transfer]



ACY_B_8(3F8D)
?
[Raw transfer]



FAD_C_3(1TRB)
TRXB_ECOLI
[Raw transfer]



GOL_A_14(4YKG)
?
[Raw transfer]



GOL_A_15(4YKF)
?
[Raw transfer]



CIT_D_14(3ITJ)
TRXB1_YEAST
[Raw transfer]



CIT_B_9(3ITJ)
TRXB1_YEAST
[Raw transfer]



FAD_B_7(2A87)
TRXB_MYCTU
[Raw transfer]



CIT_C_12(3ITJ)
TRXB1_YEAST
[Raw transfer]



FLC_A_5(2WHD)
?
[Raw transfer]



FLC_B_8(2WHD)
?
[Raw transfer]
1 PsiBlast_PDB 98.0497%-101 - C2 -4GCM - TRXB_STAAW -
21 PsiBlast_CBE 95.5097%-101 - C2 -4GCM 13.4 TRXB_STAAW
70 HHSearch 74.4847% -91 - C2 -2Q7V 12.2 ?
2 PsiBlast_PDB 72.5649% -90 - C2 -2Q7V - ? -
22 PsiBlast_CBE 72.4249% -93 - C2 -2Q7V 12.1 ?
67 HHSearch 69.1840% -98 - C2 -2Q0L - TRXB_HELPY -
52 PsiBlast_CBE 68.9539% -91 - C2 -4JNQ 6.8 ?
14 PsiBlast_PDB 67.9139%-101 - C2 -3F8R - ? -
37 PsiBlast_CBE 67.4339% -94 - C2 -3F8R 8.2 ?
40 PsiBlast_CBE 67.0839% -96 - C2 -3F8P 3.7 ?
35 PsiBlast_CBE 67.0839% -99 - C2 -3F8R 7.4 ?
41 PsiBlast_CBE 66.8838% -99 - C2 -3F8D - ? -
43 PsiBlast_CBE 66.7538% -94 - C2 -3F8D 3.9 ?
13 PsiBlast_PDB 66.4439% -96 - C2 -3F8P - ? -
6 PsiBlast_PDB 66.4439% -97 - C2 -2Q0L - TRXB_HELPY -
16 PsiBlast_PDB 66.4138% -94 - C2 -3F8D - ? -
42 PsiBlast_CBE 66.1538% -97 - C2 -3F8D - ? -
69 HHSearch 66.1241% -92 - C2 -1VDC - TRXB1_ARATH -
38 PsiBlast_CBE 66.0039% -95 - C2 -3F8P - ? -
39 PsiBlast_CBE 65.7439% -95 - C2 -3F8P - ? -
36 PsiBlast_CBE 65.1039% -96 - C2 -3F8R 6.9 ?
23 PsiBlast_CBE 63.0446% -88 - C2 -2A87 10.4 TRXB_MYCTU
56 PsiBlast_CBE 62.9538% -86 - C2 -2WHD 3.6 ?
55 PsiBlast_CBE 62.4738% -88 - C2 -2WHD 3.2 ?
51 PsiBlast_CBE 62.4639% -88 - C2 -4A5L 7.1 ?
49 PsiBlast_CBE 61.8439% -86 - C2 -4CBQ 7.7 ?
76 HHSearch 61.5342% -88 - C2 -1TRB 7.2 TRXB_ECOLI
50 PsiBlast_CBE 61.4239% -85 - C2 -4A65 6.9 ?
54 PsiBlast_CBE 60.2338% -85 - C2 -4UP3 9.2 ?
20 PsiBlast_PDB 59.9939% -85 - C2 -4CCQ 8.2 ?
48 PsiBlast_CBE 59.9239% -85 - C2 -4CCQ 8.5 ?
19 PsiBlast_PDB 59.7139% -86 - C2 -4CBQ 9.2 ?
53 PsiBlast_CBE 59.5838% -85 - C2 -4UP3 7.2 ?
62 PsiBlast_CBE 57.5731% -86 - C2 -4YKG 3.1 ?
9 PsiBlast_PDB 57.3841% -78 - C2 -1TRB 7.2 TRXB_ECOLI
61 PsiBlast_CBE 56.1331% -83 - C2 -4YKF 2.0 ?
34 PsiBlast_CBE 53.0140% -75 - C2 -3ITJ 3.8 TRXB1_YEAST
32 PsiBlast_CBE 52.3640% -78 - C2 -3ITJ 3.1 TRXB1_YEAST
33 PsiBlast_CBE 51.3940% -75 - C2 -3ITJ 3.9 TRXB1_YEAST