@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0728: (2016-03-18 )
MAKKIVSDLDLKGKTVLVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK

Atome Classification :

(55 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_3(2X15)
PGK1_HUMAN
[Raw transfer]



ADP_A_4(2X13)
PGK1_HUMAN
[Raw transfer]



ANP_A_3(1VPE)
PGKT_THEMA
[Raw transfer]



ADP_A_4(4AXX)
PGK1_HUMAN
[Raw transfer]



ADP_A_5(2WZD)
PGK1_HUMAN
[Raw transfer]



ADP_A_3(2XE7)
PGK1_HUMAN
[Raw transfer]



ANP_A_3(1VPE)
PGKT_THEMA
[Raw transfer]



ATP_A_3(1VJD)
PGK1_PIG
[Raw transfer]



ADP_A_4(2WZB)
PGK1_HUMAN
[Raw transfer]



ADP_A_4(2WZB)
PGK1_HUMAN
[Raw transfer]



ADP_A_5(2WZC)
PGK1_HUMAN
[Raw transfer]



ATP_A_3(2PAA)
PGK2_MOUSE
[Raw transfer]



ADP_A_3(1PHP)
PGK_GEOSE
[Raw transfer]



ADP_A_6(3ZOZ)
PGK1_HUMAN
[Raw transfer]



MAP_A_2(1QPG)
PGK_YEAST
[Raw transfer]



ACP_A_4(2X14)
PGK1_HUMAN
[Raw transfer]



ADP_A_3(1PHP)
PGK_GEOSE
[Raw transfer]



MAP_A_2(1QPG)
PGK_YEAST
[Raw transfer]



ATP_A_3(1VJC)
PGK1_PIG
[Raw transfer]



ADP_C_9(4NG4)
PGK_COXBU
[Raw transfer]



LA8_D_8(2Y3I)
PGK1_HUMAN
[Raw transfer]



ACP_A_4(1KF0)
PGK1_PIG
[Raw transfer]



LA8_A_4(2YBE)
PGK1_HUMAN
[Raw transfer]



ADP_A_2(2ZGV)
PGK1_HUMAN
[Raw transfer]



ADP_B_7(4NG4)
PGK_COXBU
[Raw transfer]



ACP_A_3(2XE8)
PGK1_HUMAN
[Raw transfer]



LA8_A_5(2Y3I)
PGK1_HUMAN
[Raw transfer]



AMP_A_2(1HDI)
PGK1_PIG
[Raw transfer]



CDP_A_5(3C3C)
PGK1_HUMAN
[Raw transfer]



ADP_B_6(3C3A)
PGK1_HUMAN
[Raw transfer]



ADP_A_2(4FEY)
PGK_FRATT
[Raw transfer]



FMT_A_5(3Q3V)
PGK_CAMJE
[Raw transfer]



CDF_B_5(3C3B)
PGK1_HUMAN
[Raw transfer]



3PG_A_4(1VPE)
PGKT_THEMA
[Raw transfer]



3PG_A_2(2P9T)
PGK2_MOUSE
[Raw transfer]



3PG_B_6(3C3C)
PGK1_HUMAN
[Raw transfer]



3PG_A_3(3C39)
PGK1_HUMAN
[Raw transfer]



3PG_B_4(3C39)
PGK1_HUMAN
[Raw transfer]



3PG_A_2(2XE6)
PGK1_HUMAN
[Raw transfer]



3PG_A_4(3C3A)
PGK1_HUMAN
[Raw transfer]



TZN_A_2(4O33)
PGK1_HUMAN
[Raw transfer]



3PG_A_5(2CUN)
PGK_PYRHO
[Raw transfer]



3PG_B_6(2CUN)
PGK_PYRHO
[Raw transfer]



3PG_A_5(2CUN)
PGK_PYRHO
[Raw transfer]



TZN_A_2(4O3F)
PGK1_MOUSE
[Raw transfer]



3PG_B_4(2PAA)
PGK2_MOUSE
[Raw transfer]



ATP_A_3(3PGK)
PGK_YEAST
[Raw transfer]



3PG_A_3(1QPG)
PGK_YEAST
[Raw transfer]
1 PsiBlast_PDB 95.71100% -94 - C9 -4DG5 - PGK_STAAR -
66 HHSearch 83.6052% -87 - C9 -1PHP 7.6 PGK_GEOSE
2 PsiBlast_PDB 83.5857% -86 - C9 -1VPE 8.2 PGKT_THEMA
72 HHSearch 83.4058% -86 - C9 -1VPE 8.2 PGKT_THEMA
3 PsiBlast_PDB 83.3751% -85 - C9 -1PHP 7.6 PGK_GEOSE
21 PsiBlast_CBE 82.4548% -85 - C9 -1V6S - PGK_THET8 -
4 PsiBlast_PDB 81.7848% -86 - C9 -1V6S - PGK_THET8 -
68 HHSearch 81.6347% -85 * C9 *3Q3V 3.1 PGK_CAMJE
70 HHSearch 80.5149% -82 - C9 -1V6S - PGK_THET8 -
44 PsiBlast_CBE 80.3344% -91 - C9 -3OZ7 - PGK_PLAF7 -
7 PsiBlast_PDB 80.3146% -91 - C9 -1QPG 8.3 PGK_YEAST
5 PsiBlast_PDB 80.1348% -84 - C9 -2IE8 - ? -
43 PsiBlast_CBE 79.7844% -92 - C9 -3OZ7 - PGK_PLAF7 -
11 PsiBlast_PDB 79.6144% -85 - C9 -2PAA 5.8 PGK2_MOUSE
10 PsiBlast_PDB 79.6144% -82 - C9 -2P9T 4.0 PGK2_MOUSE
20 PsiBlast_PDB 79.5644% -85 - C9 -2XE6 4.6 PGK1_HUMAN
23 PsiBlast_CBE 78.6944% -81 - C9 -13PK - PGKC_TRYBB -
75 HHSearch 78.5547% -86 - C9 -1QPG 8.3 PGK_YEAST
22 PsiBlast_CBE 78.4844% -81 - C9 -13PK - PGKC_TRYBB -
47 PsiBlast_CBE 78.2343% -83 - C9 -4O33 5.1 PGK1_HUMAN
42 PsiBlast_CBE 78.1544% -87 - C9 -2ZGV 5.1 PGK1_HUMAN
35 PsiBlast_CBE 78.1344% -84 - C9 -3C3C 4.2 PGK1_HUMAN
31 PsiBlast_CBE 78.0344% -83 - C9 -2YBE 8.0 PGK1_HUMAN
27 PsiBlast_CBE 78.0143% -84 - C9 -4NG4 6.5 PGK_COXBU
32 PsiBlast_CBE 77.9544% -83 - C9 -2XE8 4.3 PGK1_HUMAN
33 PsiBlast_CBE 77.8944% -82 - C9 -2XE7 6.2 PGK1_HUMAN
36 PsiBlast_CBE 77.8844% -87 - C9 -3C3B 3.9 PGK1_HUMAN
19 PsiBlast_PDB 77.8744% -87 - C9 -2X15 7.7 PGK1_HUMAN
51 PsiBlast_CBE 77.8343% -81 - C9 -1HDI 5.6 PGK1_PIG
67 HHSearch 77.8045% -82 - C9 -2WZB 8.2 PGK1_HUMAN
45 PsiBlast_CBE 77.7343% -84 - C9 -1KF0 5.1 PGK1_PIG
14 PsiBlast_PDB 77.6544% -87 - C9 -1VJD 5.9 PGK1_PIG
25 PsiBlast_CBE 77.5344% -84 - C9 -2PAA 3.7 PGK2_MOUSE
13 PsiBlast_PDB 77.5044% -85 - C9 -1VJC 5.5 PGK1_PIG
41 PsiBlast_CBE 77.2144% -88 - C9 -3C39 4.2 PGK1_HUMAN
29 PsiBlast_CBE 77.1944% -84 - C9 -4AXX 7.7 PGK1_HUMAN
12 PsiBlast_PDB 77.1043% -79 - C9 -2Y3I 6.6 PGK1_HUMAN
8 PsiBlast_PDB 77.0944% -82 - C9 -4FEY 5.7 PGK_FRATT
26 PsiBlast_CBE 77.0843% -86 - C9 -4NG4 6.6 PGK_COXBU
18 PsiBlast_PDB 77.0644% -85 - C9 -2X13 7.0 PGK1_HUMAN
50 PsiBlast_CBE 76.9543% -84 - C9 -4O3F 5.7 PGK1_MOUSE
40 PsiBlast_CBE 76.8644% -88 - C9 -3C39 4.3 PGK1_HUMAN
28 PsiBlast_CBE 76.6243% -79 - C9 -2Y3I 6.7 PGK1_HUMAN
30 PsiBlast_CBE 76.5044% -85 - C9 -3ZOZ 7.8 PGK1_HUMAN
17 PsiBlast_PDB 76.4844% -85 - C9 -2WZC 7.9 PGK1_HUMAN
34 PsiBlast_CBE 76.4744% -85 - C9 -3C3C 4.0 PGK1_HUMAN
38 PsiBlast_CBE 76.4544% -86 - C9 -3C3A 5.3 PGK1_HUMAN
39 PsiBlast_CBE 76.3444% -84 - C9 -3C3A 3.6 PGK1_HUMAN
16 PsiBlast_PDB 76.2144% -88 - C9 -2WZB 8.2 PGK1_HUMAN
49 PsiBlast_CBE 75.8243% -85 - C9 -2WZD 6.9 PGK1_HUMAN
48 PsiBlast_CBE 75.1043% -85 - C9 -2X14 8.2 PGK1_HUMAN
54 PsiBlast_CBE 73.8536% -84 - C9 -2CUN 2.2 PGK_PYRHO
55 PsiBlast_CBE 73.7336% -86 - C9 -2CUN 2.4 PGK_PYRHO
71 HHSearch 72.4737% -68 - C9 -2CUN 2.4 PGK_PYRHO
46 PsiBlast_CBE 47.1345% 20 - C9 -3PGK 1.8 PGK_YEAST