@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0769: (2016-03-18 )
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVNMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEHGPVTQVFENPQHTVTKRFVKEDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_C_3(1VCI)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




EDO_A_13(2PCL)
LOLD_AQUAE
[Raw transfer]




25 PsiBlast_CBE 91.5943%-124 - C1 -3TUI - METN_ECOLI -
26 PsiBlast_CBE 91.4543%-121 - C1 -3TUI - METN_ECOLI -
3 PsiBlast_PDB 91.2943%-124 - C1 -3TUZ - METN_ECOLI -
23 PsiBlast_CBE 89.9543%-119 - C1 -3TUZ - METN_ECOLI -
2 PsiBlast_PDB 89.7843%-121 - C1 -3TUI - METN_ECOLI -
111 HHSearch 89.0943%-118 - C1 -3TUI - METN_ECOLI -
22 PsiBlast_CBE 89.0943%-120 - C1 -3TUZ - METN_ECOLI -
21 PsiBlast_CBE 89.0143%-124 - C1 -3TUZ - METN_ECOLI -
24 PsiBlast_CBE 88.9943%-125 - C1 -3TUI - METN_ECOLI -
132 Fugue 88.8944%-121 - C1 -3TUZ - METN_ECOLI -
1 PsiBlast_PDB 84.2643%-111 - C1 -3DHW - METN_ECOLI -
19 PsiBlast_PDB 66.0643%-115 - C1 -1B0U - HISP_SALTY -
141 Fugue 66.0142%-115 - C1 -1B0U 5.5 HISP_SALTY
129 HHSearch 65.7841%-116 - C1 -1B0U 5.7 HISP_SALTY
28 PsiBlast_CBE 65.1045%-113 - C1 -3C4J - ? -
33 PsiBlast_CBE 64.6945%-111 - C1 -2OLK - ? -
34 PsiBlast_CBE 64.0745%-108 - C1 -2OLK - ? -
35 PsiBlast_CBE 63.9645%-109 - C1 -2OLK - ? -
7 PsiBlast_PDB 63.7545%-114 - C1 -2OLJ - ? -
9 PsiBlast_PDB 63.7445%-117 - C1 -2OUK - ? -
127 HHSearch 62.5743%-114 * C1 *2OLJ 6.1 ?
57 PsiBlast_CBE 54.0136% -96 - C1 -2PCL 3.0 LOLD_AQUAE
61 PsiBlast_CBE 53.3732%-114 - C1 -1VCI 4.0 ?
78 PsiBlast_CBE 52.0633%-103 - C1 -1XEF 6.4 HLYBP_ECOLX
75 PsiBlast_CBE 51.3733%-103 - C1 -2FGJ 6.3 HLYBP_ECOLX
76 PsiBlast_CBE 50.6233%-101 - C1 -2FFA 5.7
63 PsiBlast_CBE 49.4533%-104 - C1 -2FF7 5.6
74 PsiBlast_CBE 49.3533%-100 - C1 -2FGJ 6.7 HLYBP_ECOLX
79 PsiBlast_CBE 49.1733% -98 - C1 -1XEF 6.4 HLYBP_ECOLX
77 PsiBlast_CBE 49.1333% -98 - C1 -1XEF 6.3