@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0776: (2016-03-18 )
MAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPMQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDIDQLINALKQTKEFFSYEF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LPG_C_3(1I29)
SUFS_ECOLI
[Raw transfer]



GOL_A_5(4LW2)
CSDA_ECOLI
[Raw transfer]



GOL_C_9(4LW2)
CSDA_ECOLI
[Raw transfer]



PLP_A_3(1JF9)
SUFS_ECOLI
[Raw transfer]



ACY_E_5(1C0N)
SUFS_ECOLI
[Raw transfer]



PLP_B_5(1T3I)
CSD_SYNY3
[Raw transfer]



PLP_E_5(1I29)
SUFS_ECOLI
[Raw transfer]



PLP_C_8(4LW2)
CSDA_ECOLI
[Raw transfer]



PLP_B_6(4LW2)
CSDA_ECOLI
[Raw transfer]



PLP_A_3(1C0N)
SUFS_ECOLI
[Raw transfer]



PLP_B_6(4LW4)
CSDA_ECOLI
[Raw transfer]



PLP_A_4(4LW2)
CSDA_ECOLI
[Raw transfer]



SLP_A_4(3A9Z)
SCLY_RAT
[Raw transfer]



PLP_A_5(4LW4)
CSDA_ECOLI
[Raw transfer]



CYS_E_5(1ECX)
?
[Raw transfer]



CSS_F_6(1ELU)
?
[Raw transfer]
21 PsiBlast_CBE 96.0546%-103 - C1 -4W91 - ? -
24 PsiBlast_CBE 92.6146% -98 - C1 -4W91 - ? -
4 PsiBlast_PDB 92.5449% -93 - C1 -4Q76 - CNIF1_ARATH -
22 PsiBlast_CBE 92.4946%-100 - C1 -4W91 - ? -
23 PsiBlast_CBE 92.2546% -99 - C1 -4W91 - ? -
1 PsiBlast_PDB 91.9147% -99 - C1 -1JF9 3.9 SUFS_ECOLI
27 PsiBlast_CBE 91.3449% -93 - C1 -1T3I 3.2 CSD_SYNY3
2 PsiBlast_PDB 87.8647% -97 - C1 -1I29 4.7 SUFS_ECOLI
5 PsiBlast_PDB 87.3647% -95 - C1 -1C0N 3.6 SUFS_ECOLI
7 PsiBlast_PDB 75.8339% -91 - C1 -4LW4 3.8 CSDA_ECOLI
29 PsiBlast_CBE 74.5839% -89 - C1 -4LW2 3.3 CSDA_ECOLI
28 PsiBlast_CBE 74.4739% -87 - C1 -4LW4 3.7 CSDA_ECOLI
6 PsiBlast_PDB 74.2839% -88 - C1 -4LW2 3.4 CSDA_ECOLI
30 PsiBlast_CBE 73.9439% -88 - C1 -4LW2 3.5 CSDA_ECOLI
46 HHSearch 61.1223% -80 - C1 -3CAI - Y3778_MYCTU -
11 PsiBlast_PDB 59.1923% -83 - C1 -3LVJ - ISCS_ECO57 -
31 Fugue 58.0521% -85 - C1 -1ELU - ? -
44 HHSearch 57.8322% -90 - C1 -1EG5 - ? -
12 PsiBlast_PDB 56.9623% -84 - C1 -3LVK - ISCS_ECO57 -
42 HHSearch 56.9121% -86 - C1 -1ELU - ? -