@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0848: (2016-03-19 )
MKNDEVLLSIKNLKQYFNAGKKNEVRAIENISFDIYKGETLGLVGESGCGKSTTGKSIIKLNDITSGEILYEGIDIQKIRKRKDLLKFNKKIQMIFQDPYASLNPRLKVMDIVAEGIDIHHLATDKRDRKKRVYDLLETVGLSKEHANRYPHEFSGGQRQRIGIARALAVEPEFIIADEPISALDVSIQAQVVNLLLKLQRERGITFLFIAHDLSMVKYISDRIAVMHFGKIVEIGPAEEIYQNPLHDYTKSLLSAIPQPDPESERSRKRFSYIDDEANNHLRQLHEIRPNHFVFSTEEEAAQLRENKLVTQN

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_H_8(2FGK)

[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




SF4_B_2(4FWI)
?
[Raw transfer]




IPA_A_6(3TIF)
Y796_METJA
[Raw transfer]




EDO_A_12(2PCL)
LOLD_AQUAE
[Raw transfer]




131 Fugue 86.3628% -89 - C1 -3TUZ - METN_ECOLI -
115 HHSearch 83.9833%-111 - C1 -3TUI - METN_ECOLI -
1 PsiBlast_PDB 82.8833% -99 - C1 -4FWI 2.3 ?
31 PsiBlast_CBE 82.8333%-112 - C1 -3C4J - ? -
9 PsiBlast_PDB 82.6233%-109 - C1 -2OLK - ? -
33 PsiBlast_CBE 82.3233%-106 - C1 -2OUK - ? -
8 PsiBlast_PDB 82.3233%-105 - C1 -2OLJ - ? -
27 PsiBlast_CBE 82.1233%-109 - C1 -3TUI - METN_ECOLI -
38 PsiBlast_CBE 82.0933%-103 - C1 -2OLK - ? -
6 PsiBlast_PDB 81.9833%-109 - C1 -3TUZ - METN_ECOLI -
36 PsiBlast_CBE 81.7433%-104 - C1 -2OLK - ? -
12 PsiBlast_PDB 81.5433%-108 - C1 -3C4J - ? -
10 PsiBlast_PDB 81.2433%-109 - C1 -2OUK - ? -
7 PsiBlast_PDB 81.1133%-103 - C1 -3C41 - ? -
37 PsiBlast_CBE 81.0833%-107 - C1 -2OLK - ? -
5 PsiBlast_PDB 81.0733%-106 - C1 -3TUI - METN_ECOLI -
35 PsiBlast_CBE 80.9233%-106 - C1 -2OUK - ? -
30 PsiBlast_CBE 80.7333%-109 - C1 -3C41 - ? -
34 PsiBlast_CBE 80.5133%-104 - C1 -2OUK - ? -
11 PsiBlast_PDB 80.3833%-105 - C1 -2Q0H - ? -
84 PsiBlast_CBE 75.2235%-101 - C1 -3FVQ 5.7 FBPC_NEIG1
85 PsiBlast_CBE 73.8735%-102 - C1 -3FVQ 4.5 FBPC_NEIG1
82 PsiBlast_CBE 72.3331%-102 - C1 -3TIF 3.4 Y796_METJA
79 PsiBlast_CBE 72.3032%-104 - C1 -1B0U 3.9 HISP_SALTY
86 PsiBlast_CBE 63.6632%-102 - C1 -2PCL 2.8 LOLD_AQUAE
105 PsiBlast_CBE 52.7133% -69 - C1 -2PMK 4.9
106 PsiBlast_CBE 52.3633% -68 - C1 -2FF7 4.5
109 PsiBlast_CBE 50.5932% -66 - C1 -2FGK 5.2
108 PsiBlast_CBE 50.3932% -68 - C1 -3B5J 4.6