@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0940: (2016-03-20 )
MKQLHPNEVGVYALGGLGEIGKNTYAVEYKDEIVIIDAGIKFPDDNLLGIDYVIPDYTYLVQNQDKIVGLFITHGHEDHIGGVPFLLKQLNIPIYGGPLALGLIRNKLEEHHLLRTAKLNEINEDSVIKSKHFTISFYLTTHSIPETYGVIVDTPEGKVVHTGDFKFDFTPVGKPANIAKMAQLGEEGVLCLLSDSTNSLVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQAVEAAIKNNRKIVTFGRSMENNIKIGMELGYIKAPPETFIEPNKINTVPKHELLILCTGSQGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINSLYKAGADVIHSKISNIHTSGHGSQGDQQLMLRLIKPKYFLPIHGEYRMLKAHGETGVECGVEEDNVFIFDIGDVLALTHDSARKAGRIPSGNVLVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFNTNKLLSGPDIISRGFVYMRESGQLIYDAQRKIKTDVISKLNQNKDIQWHQIKSSIIETLQPYLFEKTARKPMILPVIMKVNEQKESNNK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

U5P_A_5(3BK2)
RNJ_THET2
[Raw transfer]



C5P_B_9(5A0V)
?
[Raw transfer]



U5P_A_5(3BK2)
RNJ_THET2
[Raw transfer]



NACID_E_3(5A0V)
?
[Raw transfer]
-
NACID_E_3(5A0T)
?
[Raw transfer]
-
NACID_F_4(5A0T)
?
[Raw transfer]
-
NACID_F_4(5A0V)
?
[Raw transfer]
-
CHAIN_B_2(3T3O)
RNJ_THET2
[Raw transfer]
-
CHAIN_B_2(3T3N)
RNJ_THET2
[Raw transfer]
-
1 PsiBlast_PDB 99.4667%-116 - C1 -3ZQ4 - RNJ1_BACSU -
21 PsiBlast_CBE 98.4967%-116 - C1 -3ZQ4 - RNJ1_BACSU -
22 PsiBlast_CBE 98.4567%-117 - C1 -3ZQ4 - RNJ1_BACSU -
23 PsiBlast_CBE 97.6967%-116 - C1 -3ZQ4 - RNJ1_BACSU -
44 HHSearch 84.8740% -93 * C1 *3BK2 4.8 RNJ_THET2
5 PsiBlast_PDB 83.9940% -95 - C1 -3T3O 8.0 RNJ_THET2
7 PsiBlast_PDB 83.9240% -91 - C1 -3BK2 4.8 RNJ_THET2
4 PsiBlast_PDB 83.3140% -97 - C1 -3T3N 9.8 RNJ_THET2
6 PsiBlast_PDB 83.1240% -90 - C1 -3BK1 - RNJ_THET2 -
24 PsiBlast_CBE 79.1141% -97 - C1 -5A0V 9.7 ?
25 PsiBlast_CBE 77.7941% -97 - C1 -5A0T 13.4 ?
2 PsiBlast_PDB 76.9041% -97 - C1 -5A0T 12.9 ?
3 PsiBlast_PDB 76.4641% -95 - C1 -5A0V 12.3 ?
47 HHSearch 54.1020% -78 - C1 -3AF5 - ? -
46 HHSearch 50.2417% -72 - C1 -2AZ4 - ? -
48 HHSearch 50.1617% -75 - C1 -2I7T - CPSF3_HUMAN -
45 HHSearch 49.7719% -79 - C1 -3IEK - RNSE_THET8 -
50 HHSearch 48.4117% -66 - C1 -2YCB - ? -
66 Fugue 48.2719% -64 - C1 -2AZ4 - ? -
11 PsiBlast_PDB 47.8821% -71 - C1 -2AZ4 - ? -