@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0976: (2016-03-20 )
MNKQQKEFKSFYSIRKSSLGVASVAISTLLLLMSNGEAQAAAEETGGTNTEAQPKTEAVASPTTTSEKAPETKPVANAVSVSNKEVEAPTSETKEAKEVKEVKAPKETKAVKPAAKATNNTYPILNQELREAIKNPAIKDKDHSAPNSRPIDFEMKKENGEQQFYHYASSVKPARVIFTDSKPEIELGLQSGQFWRKFEVYEGDKKLPIKLVSYDTVKDYAYIRFSVSNGTKAVKIVSSTHFNNKEEKYDYTLMEFAQPIYNSADKFKTEEDYKAEKLLAPYKKAKTLERQVYELNKIQDKLPEKLKAEYKKKLEDTKKALDEQVKSAITEFQNVQPTNEKMTDLQDTKYVVYESVENNESMMDTFVKHPIKTGMLNGKKYMVMETTNDDYWKDFMVEGQRVRTISKDAKNNTRTIIFPYVEGKTLYDAIVKVHVKTIDYDGQYHVRIVDKEAFTKANTDKSNKKEQQDNSAKKEATPATPSKPTPSPVEKESQKQDSQKDDNKQLPSVEKENDASSESGKDKTPATKPTKGEVESSSTTPTKVVSTTQNVAKPTTASSKTTKDVVQTSAGSSEAKDSAPLQKANIKNTNDGHTQSQNNKNTQENKAKSLPQTGEESNKDMTLPLMALLALSSIVAFVLPRKRKN

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HEM_D_12(3RUR)
ISDB_STAAN
[Raw transfer]




3ZZ_B_5(3VTM)

[Raw transfer]




HEM_A_2(2Z6F)

[Raw transfer]




HEM_B_7(3RTL)
ISDB_STAAN
[Raw transfer]




HEM_B_7(3RTL)
ISDB_STAAN
[Raw transfer]




GIX_B_6(3QUG)

[Raw transfer]




MNR_B_5(3QUH)

[Raw transfer]




HEM_B_7(3RTL)
ISDB_STAAN
[Raw transfer]




HEM_D_12(3RTL)

[Raw transfer]




GIX_A_3(3QUG)

[Raw transfer]




3ZZ_A_3(3VTM)

[Raw transfer]




MNR_B_5(3QUH)
ISDH_STAAM
[Raw transfer]




3ZZ_B_5(3VTM)
ISDH_STAAM
[Raw transfer]




GIX_B_6(3QUG)
ISDH_STAAM
[Raw transfer]




GIX_B_6(3QUG)
ISDH_STAAM
[Raw transfer]




MNR_A_3(3QUH)

[Raw transfer]




GOL_E_18(3VUA)
ISDH_STAAM
[Raw transfer]




GOL_C_11(3VUA)

[Raw transfer]




GOL_E_18(3VUA)
ISDH_STAAM
[Raw transfer]




GOL_C_11(3VUA)
ISDH_STAAM
[Raw transfer]




HEM_D_12(3RTL)
ISDB_STAAN
[Raw transfer]




HEM_A_4(4XS0)
ISDH_STAA3
[Raw transfer]




2 PsiBlast_PDB 93.3663% -67 - C4 -4XS0 2.8 ISDH_STAA3
1 PsiBlast_PDB 91.8864% -84 - C4 -4IJ2 - ISDH_STAA3 -
21 PsiBlast_CBE 91.7164% -81 - C4 -4IJ2 - ISDH_STAA3 -
24 PsiBlast_CBE 66.89100% -82 - C4 -3RTL 10.7 ISDB_STAAN
5 PsiBlast_PDB 65.3666% -55 - C4 -4FC3 - HBA_HUMAN -
22 PsiBlast_CBE 65.12100% -83 - C4 -3RTL 10.8
23 PsiBlast_CBE 65.00100% -77 - C4 -3RTL 4.8 ISDB_STAAN
4 PsiBlast_PDB 64.8594% -74 - C4 -3RUR 5.2 ISDB_STAAN
3 PsiBlast_PDB 63.37100% -81 - C4 -3RTL 5.2 ISDB_STAAN
36 HHSearch 61.74100% -79 - C4 -3RTL 5.2 ISDB_STAAN
7 PsiBlast_PDB 61.2860% -81 - C4 -2Z6F 11.9
16 PsiBlast_PDB 61.0347% -43 - C4 -3S48 - HBA_HUMAN (first) -
6 PsiBlast_PDB 60.7360% -74 - C4 -2E7D - ISDH_STAAM -
14 PsiBlast_PDB 60.6747% -42 - C4 -3SZK - ISDH_STAAW -
30 PsiBlast_CBE 60.5360% -75 - C4 -3VUA 2.9 ISDH_STAAM
61 Fugue 60.5058% -74 * C4 *2E7D - ISDH_STAAM -
32 PsiBlast_CBE 59.8360% -84 - C4 -3QUG 11.3
25 PsiBlast_CBE 59.7960% -84 - C4 -2E7D - -
12 PsiBlast_PDB 59.7247% -36 - C4 -4WJG - ISDH_STAAN -
28 PsiBlast_CBE 59.5560% -77 - C4 -3VUA - ISDH_STAAM -
27 PsiBlast_CBE 58.6760% -76 - C4 -3VUA 1.9 ISDH_STAAM
9 PsiBlast_PDB 58.5360% -79 - C4 -3QUH 3.8 ISDH_STAAM
8 PsiBlast_PDB 58.1660% -78 - C4 -3QUG 3.2 ISDH_STAAM
26 PsiBlast_CBE 57.5060% -78 - C4 -3VUA 3.0
33 PsiBlast_CBE 57.3259% -73 - C4 -3VTM 11.4
10 PsiBlast_PDB 57.1660% -81 - C4 -3VUA 2.9 ISDH_STAAM
31 PsiBlast_CBE 57.1460% -82 - C4 -3QUH 11.4
11 PsiBlast_PDB 56.7759% -79 - C4 -3VTM 3.4 ISDH_STAAM
37 HHSearch 56.3758% -77 - C4 -3QUG 3.2 ISDH_STAAM