@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1036: (2016-03-21 )
MDYKETLLMPKTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFDVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEYVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQKYELPVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDVYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHVKEESVHLADMPKVVEVDQALLDKWRTFMNLRDDVNRALETARNEKVIGKSLEAKVTIASNDKFNASEFLTSFDALHQLFIVSQVKVVDKLDDQATAYEHGDIVIEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVVKSLV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MRC_A_16(1FFY)
SYI1_STAAU
[Raw transfer]



MRC_A_16(1QU2)
SYI1_STAAU
[Raw transfer]



ILA_A_4(1JZQ)
SYI_THET8
[Raw transfer]



MRC_A_16(1QU2)
SYI1_STAAU
[Raw transfer]



MRC_A_4(1QU3)
SYI1_STAAU
[Raw transfer]



MRC_A_16(1FFY)
SYI1_STAAU
[Raw transfer]



EDO_A_6(3KFL)
?
[Raw transfer]



MRC_A_4(1JZS)
SYI_THET8
[Raw transfer]
76 Fugue 99.6699% -84 - C2 -1QU2 Error SYI1_STAAU
3 PsiBlast_PDB 99.5799% -84 - C2 -1FFY Error SYI1_STAAU
1 PsiBlast_PDB 99.5799% -84 - C2 -1QU2 Error SYI1_STAAU
52 HHSearch 98.4798% -81 - C2 -1FFY Error SYI1_STAAU
2 PsiBlast_PDB 96.2299% -86 - C2 -1QU3 Error SYI1_STAAU
5 PsiBlast_PDB 73.7530% -63 - C2 -1JZS 7.3 SYI_THET8
4 PsiBlast_PDB 73.2430% -64 - C2 -1JZQ 6.0 SYI_THET8
6 PsiBlast_PDB 73.0030% -64 - C2 -1ILE - SYI_THET8 -
54 HHSearch 71.6330% -61 * C2 *1ILE - SYI_THET8 -
78 Fugue 67.8123% -52 - C2 -1GAX - SYV_THETH -
8 PsiBlast_PDB 67.0724% -52 - C2 -1IVS - SYV_THETH -
7 PsiBlast_PDB 66.8924% -50 - C2 -1GAX - SYV_THETH -
53 HHSearch 65.7125% -57 - C2 -1GAX - SYV_THETH -
57 HHSearch 62.3524% -51 - C2 -2V0C - ? -
55 HHSearch 60.4920% -54 - C2 -1WZ2 - SYL_PYRHO -
56 HHSearch 59.8220% -52 - C2 -1WKB - SYL_PYRHO -
14 PsiBlast_PDB 57.8622% -54 - C2 -1OBC - ? -
10 PsiBlast_PDB 57.6622% -53 - C2 -2V0C - ? -
13 PsiBlast_PDB 57.5722% -55 - C2 -1H3N - ? -
11 PsiBlast_PDB 57.5422% -54 - C2 -2BTE - ? -