@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1063: (2016-03-21 )
MIGKIINERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHENRANEDVYELDKMKTIAVPLKKEDLAKHISEHKSNQPKRETTQVPIVNGPAHHQQFQKPEGTVYEPKPKKKSTRKIVLLSLIFSLLMIALVSFVAMAMFGNKYEETPDVIGKSVKEAEQIFNKNNLKLGKISRSYSDKYPENEIIKTTPNTGERVERGDSVDVVISKGPEKVKMPNVIGLPKEEALQKLKSLGLKDVTIEKVYNNQAPKGYIANQSVTANTEIAIHDSNIKLYESLGIKQVYVEDFEHKSFSKAKKALEEKGFKVESKEEYSDDIDEGDVISQSPKGKSVDEGSTISFVVSKGKKSDSSDVKTTTESVDVPYTGKNDKSQKVKVYIKDKDNDGSTEKGSFDITSDQRIDIPLRIEKGKTASYIVKVDGKTVAEKEVSYDDI

Atome Classification :

(34 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACP_A_2(1O6Y)
PKNB_MYCTU
[Raw transfer]



ATP_A_3(4FG9)
KCC1A_HUMAN
[Raw transfer]



ATP_A_3(4FG8)
KCC1A_HUMAN
[Raw transfer]



AGS_A_2(3ORM)
?
[Raw transfer]



AGS_A_2(3ORK)
?
[Raw transfer]



ADP_A_2(3F61)
PKNB_MYCTU
[Raw transfer]



ATP_B_4(4FG9)
KCC1A_HUMAN
[Raw transfer]



AGS_A_2(3ORT)
?
[Raw transfer]



AGS_A_2(3ORO)
?
[Raw transfer]



ADP_A_4(3NIZ)
?
[Raw transfer]



AGS_A_2(3ORP)
?
[Raw transfer]



ATP_A_2(4FG7)
KCC1A_HUMAN
[Raw transfer]



ATP_B_4(4FG8)
KCC1A_HUMAN
[Raw transfer]



ANP_A_8(3Q5I)
?
[Raw transfer]



ANP_A_7(3LIJ)
?
[Raw transfer]



GOL_A_4(3HZT)
?
[Raw transfer]



GOL_A_9(3HZT)
?
[Raw transfer]



S25_A_3(3TKI)
CHK1_HUMAN
[Raw transfer]



MIX_G_7(2FUM)
PKNB_MYCTU
[Raw transfer]



STU_A_2(4MVF)
CDPK2_PLAFK
[Raw transfer]



IXM_A_2(2QKR)
?
[Raw transfer]



MIX_E_5(2FUM)
PKNB_MYCTU
[Raw transfer]



J60_A_7(3HZT)
?
[Raw transfer]



16X_B_8(2X4F)
MYLK4_HUMAN
[Raw transfer]



EDO_A_3(3I7B)
?
[Raw transfer]



EDO_A_4(3T3U)
?
[Raw transfer]
22 PsiBlast_CBE 91.44100%-100 - C1 -4EQM - ? -
21 PsiBlast_CBE 91.07100%-100 - C1 -4EQM - ? -
24 PsiBlast_CBE 90.69100% -97 - C1 -4EQM - ? -
23 PsiBlast_CBE 90.66100%-100 - C1 -4EQM - ? -
1 PsiBlast_PDB 89.98100% -96 - C1 -4EQM - ? -
25 PsiBlast_CBE 89.93100% -97 - C1 -4EQM - ? -
2 PsiBlast_PDB 76.06100% -41 - C2 -3PY9 - ? -
103 Fugue 72.8398% -34 - C2 -3PY9 - ? -
13 PsiBlast_PDB 65.8434% -72 - C1 -4OW8 - PKNA_MYCTU -
7 PsiBlast_PDB 64.6738% -78 - C1 -3ORK 5.4 ?
10 PsiBlast_PDB 64.1438% -72 - C1 -3ORT 7.6 ?
11 PsiBlast_PDB 63.8238% -77 - C1 -3F61 5.8 PKNB_MYCTU
6 PsiBlast_PDB 62.7638% -75 - C1 -3ORM 7.4 ?
9 PsiBlast_PDB 62.3838% -74 - C1 -3ORP 7.5 ?
26 PsiBlast_CBE 62.0539% -79 - C1 -2FUM 7.3 PKNB_MYCTU
5 PsiBlast_PDB 61.4139% -70 - C1 -2FUM 6.7 PKNB_MYCTU
8 PsiBlast_PDB 61.2738% -70 - C1 -3ORO 8.3 ?
4 PsiBlast_PDB 60.6339% -76 - C1 -1O6Y 5.7 PKNB_MYCTU
97 HHSearch 56.4425% -69 - C1 -2Y7J - PHKG2_HUMAN -
93 HHSearch 55.5033% -83 - C1 -3UC3 - SRK2I_ARATH -
30 PsiBlast_CBE 52.8032% -78 - C1 -4FG9 3.9 KCC1A_HUMAN
33 PsiBlast_CBE 51.3932% -78 - C1 -4FG7 4.8 KCC1A_HUMAN
31 PsiBlast_CBE 50.7732% -76 - C1 -4FG8 5.4 KCC1A_HUMAN
28 PsiBlast_CBE 50.7635% -79 - C1 -3Q5I 4.3 ?
32 PsiBlast_CBE 49.7732% -79 - C1 -4FG8 3.6 KCC1A_HUMAN
15 PsiBlast_PDB 48.1530% -48 - C1 -4MVF 8.7 CDPK2_PLAFK
29 PsiBlast_CBE 47.5632% -76 - C1 -4FG9 5.2 KCC1A_HUMAN
42 PsiBlast_CBE 47.5336% -76 - C1 -3NIZ 4.9 ?
66 PsiBlast_CBE 46.1633% -69 - C1 -3I7B 2.9 ?
78 PsiBlast_CBE 45.4931% -51 - C1 -2X4F 4.9 MYLK4_HUMAN
62 PsiBlast_CBE 45.0933% -68 - C1 -3T3U 3.0 ?
44 PsiBlast_CBE 43.6236% -70 - C1 -2QKR 5.4 ?
35 PsiBlast_CBE 38.9033% -47 * C1 *3LIJ 3.9 ?
79 PsiBlast_CBE 38.5434% -57 - C1 -3HZT 6.1 ?