@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1080: (2016-03-21 )
MAFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALFEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMSNKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKEIAKPNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGDVLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKMKGLDKLNMSEKQIDHIKAIIQSMTPAERNNPDTLNVSRKKRIAKGSGRSLQEVNRLMKQFNDMKKMMKQFTGGGKGKKGKRNQMQNMLKGMNLPF

Atome Classification :

(44 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]



GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]



GDP_D_17(4C7O)
FTSY_ECOLI
[Raw transfer]



GCP_B_6(1RJ9)
SRP54_THEAQ
[Raw transfer]



GDP_A_6(1O87)
SRP54_THEAQ
[Raw transfer]



GNP_A_6(1JPN)
SRP54_THEAQ
[Raw transfer]



GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]



GNP_B_5(1JPN)
SRP54_THEAQ
[Raw transfer]



GNP_B_2(1JPJ)
SRP54_THEAQ
[Raw transfer]



GDP_B_11(4C7O)
FTSY_ECOLI
[Raw transfer]



GDP_B_2(2NG1)
SRP54_THEAQ
[Raw transfer]



GDP_B_12(1O87)
SRP54_THEAQ
[Raw transfer]



GNP_B_20(2J7P)
SRP54_THEAQ
[Raw transfer]



GDP_A_7(1NG1)
SRP54_THEAQ
[Raw transfer]



GNP_A_12(2J7P)
SRP54_THEAQ
[Raw transfer]



GDP_C_2(3E70)
?
[Raw transfer]



GDP_C_2(3E70)
?
[Raw transfer]



CIT_B_4(1VMA)
?
[Raw transfer]



GCP_A_5(1RJ9)
SRP54_THEAQ
[Raw transfer]



GCP_D_17(1OKK)
SRP54_THEAQ
[Raw transfer]



GCP_D_17(1OKK)
FTSY_THEAQ
[Raw transfer]



GDP_B_11(4C7O)
SRP54_ECOLI
[Raw transfer]



GDP_D_17(4C7O)
SRP54_ECOLI
[Raw transfer]



EDO_D_4(2NG1)
SRP54_THEAQ
[Raw transfer]



EDO_B_13(3NG1)
SRP54_THEAQ
[Raw transfer]



GOL_B_14(3DMD)
?
[Raw transfer]



GNP_K_11(2Q9C)
FTSY_THEAQ
[Raw transfer]



GNP_T_20(2Q9B)
FTSY_THEAQ
[Raw transfer]



FMT_B_11(1O87)
SRP54_THEAQ
[Raw transfer]



GDP_D_2(2IYL)
FTSY_THEAQ
[Raw transfer]



GCP_B_6(1RJ9)
FTSY_THEAQ
[Raw transfer]



ACY_B_7(1JPN)
SRP54_THEAQ
[Raw transfer]



GDP_D_18(4C7O)
SRP54_ECOLI
[Raw transfer]



ACY_A_9(1JPN)
SRP54_THEAQ
[Raw transfer]



EDO_A_2(2YHS)
FTSY_ECOLI
[Raw transfer]



EDO_A_2(2YHS)
FTSY_ECOLI
[Raw transfer]



EDO_B_14(3NG1)
SRP54_THEAQ
[Raw transfer]



EDO_A_12(3NG1)
SRP54_THEAQ
[Raw transfer]



GNP_B_20(2J7P)
FTSY_THEAQ
[Raw transfer]



GCP_B_6(1RJ9)
FTSY_THEAQ
[Raw transfer]



GNP_A_12(2J7P)
FTSY_THEAQ
[Raw transfer]
1 PsiBlast_PDB 91.0351% -86 - C4 -2XXA - SRP54_ECOLI -
21 PsiBlast_CBE 90.8651% -88 - C4 -2XXA - SRP54_ECOLI -
23 PsiBlast_CBE 90.1647% -80 - C3 -2FFH - SRP54_THEAQ -
22 PsiBlast_CBE 89.5047% -77 - C3 -2FFH - SRP54_THEAQ -
68 HHSearch 89.3652% -67 - C- -2XXA - SRP54_ECOLI -
70 HHSearch 89.1848% -80 - C3 -2FFH - SRP54_THEAQ -
2 PsiBlast_PDB 88.7647% -79 - C3 -2FFH - SRP54_THEAQ -
69 HHSearch 85.4636% -81 - C4 -3DM5 Error SRP54_PYRFU
32 PsiBlast_CBE 85.1037% -82 - C4 -3DM5 7.2 SRP54_PYRFU
20 PsiBlast_PDB 85.0137% -80 - C4 -3DM5 Error SRP54_PYRFU
24 PsiBlast_CBE 84.1054% -95 - C4 -4C7O 4.0 SRP54_ECOLI
4 PsiBlast_PDB 83.2854% -98 - C4 -4C7O 3.0 SRP54_ECOLI
29 PsiBlast_CBE 82.7949% -98 - C4 -2C03 - SRP54_THEAQ -
14 PsiBlast_PDB 82.5349% -93 - C4 -3NG1 3.7 SRP54_THEAQ
8 PsiBlast_PDB 82.0749% -91 - C4 -1JPN 7.3 SRP54_THEAQ
31 PsiBlast_CBE 82.0649% -93 - C4 -3NG1 3.7 SRP54_THEAQ
25 PsiBlast_CBE 81.9749% -95 - C4 -2J46 - SRP54_THEAQ -
17 PsiBlast_PDB 81.8649% -89 - C4 -2J7P 9.4 SRP54_THEAQ
15 PsiBlast_PDB 81.8249% -91 - C4 -1OKK 2.9 SRP54_THEAQ
26 PsiBlast_CBE 81.8149% -94 - C4 -2J45 - SRP54_THEAQ -
33 PsiBlast_CBE 81.1449% -92 - C4 -2J7P 9.4 SRP54_THEAQ
30 PsiBlast_CBE 81.0349% -93 - C4 -1JPN 6.6 SRP54_THEAQ
18 PsiBlast_PDB 80.6749% -87 - C4 -1NG1 7.2 SRP54_THEAQ
7 PsiBlast_PDB 80.6749% -90 - C4 -1JPJ 7.5 SRP54_THEAQ
28 PsiBlast_CBE 80.5049% -89 - C4 -1O87 7.0 SRP54_THEAQ
6 PsiBlast_PDB 80.2649% -87 - C4 -1O87 7.3 SRP54_THEAQ
36 PsiBlast_CBE 79.9149% -86 - C4 -2NG1 6.1 SRP54_THEAQ
5 PsiBlast_PDB 78.0450% -89 - C4 -1RJ9 9.2 SRP54_THEAQ
78 HHSearch 70.2032% -91 - C4 -3E70 6.9 ?
88 HHSearch 69.0732% -96 - C4 -1RJ9 3.4 FTSY_THEAQ
83 HHSearch 67.0033% -88 - C4 -2YHS 3.3 FTSY_ECOLI
40 PsiBlast_CBE 66.4933% -88 - C4 -3DMD 3.7 ?
38 PsiBlast_CBE 65.8133% -89 - C4 -3E70 6.9 ?
46 PsiBlast_CBE 64.0034% -81 - C4 -2YHS 3.3 FTSY_ECOLI
49 PsiBlast_CBE 63.0841% -86 - C4 -1VMA 3.9 ?
44 PsiBlast_CBE 62.5534% -78 - C4 -4C7O 7.4 FTSY_ECOLI
45 PsiBlast_CBE 61.4934% -73 - C4 -4C7O 6.9 FTSY_ECOLI
59 PsiBlast_CBE 61.3439% -80 - C4 -2J7P 2.9 FTSY_THEAQ
58 PsiBlast_CBE 60.6839% -75 - C4 -2J7P 2.9 FTSY_THEAQ
57 PsiBlast_CBE 60.5539% -78 - C4 -1OKK 7.5 FTSY_THEAQ
64 PsiBlast_CBE 59.7639% -74 - C4 -1RJ9 2.9 FTSY_THEAQ
54 PsiBlast_CBE 59.0839% -82 - C4 -2Q9B 4.3 FTSY_THEAQ
52 PsiBlast_CBE 58.8239% -80 - C4 -2Q9C 5.2 FTSY_THEAQ
60 PsiBlast_CBE 57.5239% -87 - C4 -2IYL 5.2 FTSY_THEAQ