@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1086: (2016-03-22 )
MVIQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKKDMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKVSNALQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKSHYNIEVPEDAEIIAWFDAIGKKRGLIRRGNEIDYEAVIELIIYDIRNAKIGNYCFDIFKDMTEELANDANN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_A_3(1PUJ)
RBGA_BACSU
[Raw transfer]



GNP_A_3(1PUJ)
RBGA_BACSU
[Raw transfer]



GNP_A_3(1PUJ)
RBGA_BACSU
[Raw transfer]



GNP_A_2(3CNL)
RBGA_THEMA
[Raw transfer]



GTP_A_2(3CNN)
RBGA_THEMA
[Raw transfer]



GDP_A_2(3CNO)
RBGA_THEMA
[Raw transfer]



GNP_A_2(3CNL)
RBGA_THEMA
[Raw transfer]



DGI_A_2(3H2Y)
?
[Raw transfer]



GDP_A_3(3EC1)
?
[Raw transfer]
1 PsiBlast_PDB 90.9854%-104 - C12 -1PUJ 7.3 RBGA_BACSU
98 HHSearch 89.9453% -99 - C12 -1PUJ 7.3 RBGA_BACSU
124 Fugue 88.1951% -92 - C12 -1PUJ 7.3 RBGA_BACSU
2 PsiBlast_PDB 64.7330% -80 - C12 -3CNL 7.2 RBGA_THEMA
3 PsiBlast_PDB 63.5630% -82 - C12 -3CNN 7.3 RBGA_THEMA
99 HHSearch 63.0431% -69 - C12 -3CNL 7.4 RBGA_THEMA
4 PsiBlast_PDB 63.0130% -82 - C12 -3CNO 7.3 RBGA_THEMA
100 HHSearch 53.3018% -81 - C12 -2YV5 - RSGA_AQUAE -
128 Fugue 51.7519% -45 - C12 -1U0L - RSGA_THEMA -
106 HHSearch 51.0225% -92 * C12 *2RCN - RSGA_SALTY -
103 HHSearch 49.0126% -40 - C12 -3EC1 5.0 ?
102 HHSearch 48.1918% -84 - C12 -1T9H - RSGA_BACSU -
101 HHSearch 47.8020% -67 - C12 -1U0L - RSGA_THEMA -
104 HHSearch 47.7425% -52 - C12 -3H2Y 7.2 ?
7 PsiBlast_PDB 44.0224% -50 - C11 -4DCS - DER_BACSU -
8 PsiBlast_PDB 43.8824% -41 - C11 -4DCU - DER_BACSU -
9 PsiBlast_PDB 43.4424% -43 - C11 -4DCV - DER_BACSU -
131 Fugue 42.4213% -42 - C2 -4OHC - ? -
125 Fugue 41.3916% -7 - C9 -3EC1 - ? -
126 Fugue 39.8917% -33 - C5 -1MKY - DER_THEMA -