@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1144: (2016-03-22 )
MNKNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIPHHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIVKQKLSALEHLDNQQLHDYLAQFDAVSAENIHPNNRQRVLRAIEYYLKTKKLLSNRKKVQQFTENYDTLLLGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVEQGYESCQSMQAIGYKELIPVINGQMIYEDAVNDLKQHSRQYAKRQMTWFKNKMSVHWLDKENMSLQMMLDEITTQIK

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PPV_B_20(3EPK)
MOD5_YEAST
[Raw transfer]



PPV_A_10(3EPH)
MOD5_YEAST
[Raw transfer]



DPO_A_3(3CRQ)
MIAA_PSEAE
[Raw transfer]



PPV_A_10(3EPH)
MOD5_YEAST
[Raw transfer]



DPO_A_4(3CRR)
MIAA_PSEAE
[Raw transfer]



PPV_B_17(3EPH)
MOD5_YEAST
[Raw transfer]



DST_A_5(2ZXU)
MIAA_ECOLI
[Raw transfer]



DMA_B_10(3EPL)
MOD5_YEAST
[Raw transfer]



DMA_A_6(3EPL)
MOD5_YEAST
[Raw transfer]



DST_B_6(2ZXU)
MIAA_ECOLI
[Raw transfer]



ACP_A_4(3W34)
URK_THET8
[Raw transfer]
24 PsiBlast_CBE 83.0235% -95 - C3 -3EPH 2.8 MOD5_YEAST
6 PsiBlast_PDB 82.9835% -92 - C3 -3EPK - MOD5_YEAST -
22 PsiBlast_CBE 82.9335% -93 - C3 -3EPK 2.7 MOD5_YEAST
4 PsiBlast_PDB 82.8635% -95 - C3 -3EPH - MOD5_YEAST -
23 PsiBlast_CBE 81.5335% -92 - C3 -3EPJ - MOD5_YEAST -
5 PsiBlast_PDB 81.1235% -90 - C3 -3EPJ - MOD5_YEAST -
52 Fugue 80.0134% -87 - C3 -3EPH 4.0 MOD5_YEAST
25 PsiBlast_CBE 78.6536% -79 - C3 -3FOZ - MIAA_ECOLI -
2 PsiBlast_PDB 78.0444%-103 - C3 -2QGN - MIAA_BACHD -
21 PsiBlast_CBE 77.9935% -85 - C3 -3EPL 3.5 MOD5_YEAST
36 HHSearch 77.8436% -80 - C3 -3FOZ - MIAA_ECOLI -
7 PsiBlast_PDB 77.4335% -81 - C3 -3EPL 2.2 MOD5_YEAST
10 PsiBlast_PDB 77.1836% -77 - C3 -2ZM5 - MIAA_ECOLI -
8 PsiBlast_PDB 77.0636% -78 - C3 -3FOZ - MIAA_ECOLI -
9 PsiBlast_PDB 76.9936% -78 - C3 -2ZXU 5.0 MIAA_ECOLI
26 PsiBlast_CBE 76.4136% -76 - C3 -2ZXU 3.4 MIAA_ECOLI
34 HHSearch 75.5935% -92 * C3 *3EPH 4.0 MOD5_YEAST
37 HHSearch 72.6931% -99 - C3 -3A8T - IPT_HUMLU -
13 PsiBlast_PDB 71.7033% -94 - C3 -3CRR 4.4 MIAA_PSEAE
12 PsiBlast_PDB 71.0333% -92 - C3 -3CRQ 3.8 MIAA_PSEAE
48 HHSearch 28.9940% 1 - C3 -3W34 2.5 URK_THET8