@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1164: (2016-03-22 )
MKKLNIALLGLGTVGSGVVKIIEENRQQIQDTLNKDIVIKHILVRDKSKKRPLNISQYHLTEDVNEILNDDSLDIIVEVMGGIEPTVDWLRTALKNKKHVITANKDLLAVHLKLLEDLAEENGVALKFEASVAGGIPIVNAINNGLNANNISKFMGILNGTSNFILSKMTKEQTTFEEALDEAKRLGFAEADPTDDVEGVDAARKVVITSYLSFNQVIKLNDVKRRGISGVTLTDINVADQLGYKIKLIGKGIYENGKVNASVEPTLIDKKHQLAAVEDEYNAIYVIGDAVGDTMFYGKGAGSLATGSAVVSDLLNVALFFESDLHTLPPHFELKTDKTREMMDSDAEINIKEKSNFFVVVNHVKGSIENFENELKAILPFHRSLRVANYDNQSYAAVIVGLESSPEELITKHGYEVDKVYPVEGV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PEG_A_14(4PG4)
?
[Raw transfer]




DMS_B_26(4PG4)
?
[Raw transfer]




GOL_B_15(2EJW)
?
[Raw transfer]




44 Fugue 96.3999%-111 - C4 -4PG7 - ? -
18 PsiBlast_CBE 95.04100%-113 - C4 -4PG4 3.3 ?
2 PsiBlast_PDB 94.41100%-110 - C4 -4PG6 - ? -
1 PsiBlast_PDB 93.59100%-109 - C4 -4PG4 2.8 ?
45 Fugue 72.5535% -85 - C4 -3MTJ - ? -
27 HHSearch 65.2935% -81 - C4 -2EJW - ? -
3 PsiBlast_PDB 65.1441% -82 - C4 -3MTJ - ? -
21 PsiBlast_CBE 64.6635% -90 - C4 -2EJW 3.1 ?
5 PsiBlast_PDB 64.2235% -89 - C4 -2EJW - ? -
20 PsiBlast_CBE 64.0535% -91 - C4 -2EJW - ? -
19 PsiBlast_CBE 63.8235% -88 - C4 -2EJW - ? -
47 Fugue 63.7933% -76 - C4 -2EJW - ? -
23 HHSearch 63.0734% -82 - C4 -3DO5 - ? -
4 PsiBlast_PDB 62.8335% -76 - C4 -3DO5 - ? -
26 HHSearch 62.4927% -77 - C4 -3C8M - ? -
6 PsiBlast_PDB 59.6628% -81 - C4 -4XB1 - ? -
7 PsiBlast_PDB 59.6428% -83 - C4 -4XB2 - ? -
25 HHSearch 58.0024% -75 - C4 -3ING - ? -
24 HHSearch 57.7323% -78 - C4 -1EBF - DHOM_YEAST -
48 Fugue 55.0123% -75 - C4 -1EBF - DHOM_YEAST -