@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1188: (2016-03-23 )
MNKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTINKDGSISIEDNGRGMPTGIHKSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVLHDVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRVTTLMGDKVQPRREWIEKHVEFGMQEDQSILDNSEVQVLENDQFDEEEI

Atome Classification :

(60 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




ADP_A_2(4PU9)
GYRB_ECOLI
[Raw transfer]




ANP_B_7(1EI1)
GYRB_ECOLI
[Raw transfer]




DOO_B_12(4KQV)
?
[Raw transfer]




ANP_A_2(4WUC)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_2(4WUD)
GYRB_ECOLI
[Raw transfer]




ANP_A_2(4XTJ)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_2(4WUB)
GYRB_ECOLI
[Raw transfer]




DOO_B_7(4KFG)
GYRB_ECOLI
[Raw transfer]




ADP_A_2(4PRV)
GYRB_ECOLI
[Raw transfer]




1YP_A_2(4LPB)
?
[Raw transfer]




28G_A_2(4MBC)
?
[Raw transfer]




ANP_B_8(1S16)
PARE_ECOLI
[Raw transfer]




DOO_A_5(4KQV)
?
[Raw transfer]




XAM_C_7(4URM)
?
[Raw transfer]




2B7_A_2(4MOT)
?
[Raw transfer]




RLI_A_3(4DUH)
GYRB_ECOLI
[Raw transfer]




28F_A_3(4MB9)
?
[Raw transfer]




DOO_A_5(4KFG)
GYRB_ECOLI
[Raw transfer]




CJC_A_3(4HYM)
?
[Raw transfer]




19X_B_4(4HY1)
?
[Raw transfer]




RLI_B_4(4DUH)
GYRB_ECOLI
[Raw transfer]




B46_A_2(3G7E)
GYRB_ECOLI
[Raw transfer]




TTJ_A_2(5BOD)
?
[Raw transfer]




1A1_D_11(4HYP)
GYRB_ECOLI
[Raw transfer]




NOV_C_6(4URN)
?
[Raw transfer]




NOV_B_6(4URO)
GYRB_STAAU
[Raw transfer]




NOV_D_8(4URO)
GYRB_STAAU
[Raw transfer]




NOV_A_3(1KIJ)
?
[Raw transfer]




NOV_A_3(1KIJ)
?
[Raw transfer]




NOV_B_5(4URN)
?
[Raw transfer]




1EU_A_3(3FV5)
PARE_ECOLI
[Raw transfer]




NOV_C_7(4URO)
GYRB_STAAU
[Raw transfer]




1A1_A_5(4HYP)
GYRB_ECOLI
[Raw transfer]




NOV_A_5(4URO)
GYRB_STAAU
[Raw transfer]




1A1_C_9(4HYP)
GYRB_ECOLI
[Raw transfer]




XAM_B_6(4URM)
?
[Raw transfer]




XAM_D_8(4URM)
?
[Raw transfer]




XAM_A_5(4URM)
?
[Raw transfer]




1A1_B_7(4HYP)
GYRB_ECOLI
[Raw transfer]




NOV_B_4(1KIJ)
?
[Raw transfer]




0RA_A_2(4EM7)
?
[Raw transfer]




RWX_B_8(4BAE)
GYRB_MYCSM
[Raw transfer]




19Y_A_3(4HXZ)
?
[Raw transfer]




NOV_B_2(1AJ6)
GYRB_ECOLI
[Raw transfer]




4S4_A_2(4ZVI)
?
[Raw transfer]




1 PsiBlast_PDB 90.8869% -78 - C3 -4JUO - PARE_STRPN -
135 Fugue 67.4951% -51 - C2 -1EI1 8.1 GYRB_ECOLI
17 PsiBlast_PDB 67.3750% -54 - C2 -4XTJ 9.8 GYRB_ECOLI
134 Fugue 67.1950% -50 - C2 -1EI1 8.1 GYRB_ECOLI
18 PsiBlast_PDB 67.0850% -54 - C2 -4WUB 9.6 GYRB_ECOLI
20 PsiBlast_PDB 67.0550% -54 - C2 -4WUD 9.9 GYRB_ECOLI
19 PsiBlast_PDB 66.9450% -53 - C2 -4WUC 10.1 GYRB_ECOLI
56 PsiBlast_CBE 66.6047% -57 - C2 -3ZKB - GYRB_MYCTU -
115 HHSearch 66.2548% -56 - C2 -1KIJ 6.5 ?
42 PsiBlast_CBE 66.2347% -58 - C2 -3ZKD - GYRB_MYCTU -
16 PsiBlast_PDB 66.0647% -59 - C2 -3ZKD - GYRB_MYCTU -
40 PsiBlast_CBE 65.8547% -58 - C2 -3ZKD - GYRB_MYCTU -
38 PsiBlast_CBE 65.6347% -63 - C2 -3ZKD - GYRB_MYCTU -
54 PsiBlast_CBE 65.3547% -59 - C2 -3ZKB - GYRB_MYCTU -
39 PsiBlast_CBE 65.3147% -59 - C2 -3ZKD - GYRB_MYCTU -
60 PsiBlast_CBE 65.2450% -51 - C2 -1EI1 8.1 GYRB_ECOLI
55 PsiBlast_CBE 65.1747% -57 - C2 -3ZKB - GYRB_MYCTU -
58 PsiBlast_CBE 64.9950% -55 - C2 -4PRV 7.1 GYRB_ECOLI
59 PsiBlast_CBE 64.9750% -51 - C2 -1EI1 7.8 GYRB_ECOLI
61 PsiBlast_CBE 64.9450% -64 - C2 -4ZVI 5.0 ?
68 PsiBlast_CBE 64.1045% -52 - C2 -1KIJ 7.4 ?
57 PsiBlast_CBE 64.0050% -53 - C2 -4PU9 7.2 GYRB_ECOLI
69 PsiBlast_CBE 63.2145% -54 - C2 -1KIJ 6.6 ?
93 PsiBlast_CBE 60.8337% -46 - C2 -1S16 10.1 PARE_ECOLI
94 PsiBlast_CBE 60.7037% -45 - C2 -1S16 9.7 PARE_ECOLI
116 HHSearch 60.3636% -50 - C2 -1S16 9.7 PARE_ECOLI
90 PsiBlast_CBE 59.4138% -52 - C2 -4HYM 6.0 ?
92 PsiBlast_CBE 58.9138% -57 - C2 -4HXZ 5.1 ?
89 PsiBlast_CBE 58.3538% -59 - C2 -4KQV 6.7 ?
21 PsiBlast_CBE 55.8299% -59 - C2 -4URN 5.1 ?
65 PsiBlast_CBE 53.1269% -55 - C2 -4MB9 5.0 ?
66 PsiBlast_CBE 53.0869% -54 - C2 -4LPB 6.4 ?
67 PsiBlast_CBE 52.8069% -55 - C2 -4EM7 5.2 ?
22 PsiBlast_CBE 52.7899% -49 - C2 -4URN 5.0 ?
110 PsiBlast_CBE 52.6354% -50 - C2 -3G7E 6.9 GYRB_ECOLI
64 PsiBlast_CBE 52.6069% -53 - C2 -4MBC 5.2 ?
62 PsiBlast_CBE 51.8169% -55 - C2 -5BOD 5.7 ?
86 PsiBlast_CBE 51.6359% -49 - C2 -4URM 9.2 ?
107 PsiBlast_CBE 51.6054% -54 - C2 -4HYP 6.8 GYRB_ECOLI
63 PsiBlast_CBE 51.5269% -53 - C2 -4MOT 5.8 ?
97 PsiBlast_CBE 51.3254% -53 - C2 -1AJ6 5.2 GYRB_ECOLI
106 PsiBlast_CBE 51.0554% -56 - C2 -4HYP 6.8 GYRB_ECOLI
108 PsiBlast_CBE 50.6854% -54 - C2 -4HYP 6.7 GYRB_ECOLI
87 PsiBlast_CBE 50.4359% -44 - C2 -4URM 8.5 ?
96 PsiBlast_CBE 50.1354% -46 - C2 -4DUH 6.1 GYRB_ECOLI
95 PsiBlast_CBE 50.0554% -50 - C2 -4DUH 6.8 GYRB_ECOLI
109 PsiBlast_CBE 49.5854% -55 - C2 -4HYP 7.2 GYRB_ECOLI
82 PsiBlast_CBE 49.2059% -44 - C2 -4URO 5.7 GYRB_STAAU
80 PsiBlast_CBE 48.4859% -55 - C2 -4URO 5.1 GYRB_STAAU
104 PsiBlast_CBE 47.8854% -43 - C2 -4KFG 7.5 GYRB_ECOLI
83 PsiBlast_CBE 47.7959% -49 - C2 -4URO 6.4 GYRB_STAAU
124 HHSearch 47.4846% -54 * C2 *3FV5 5.7 PARE_ECOLI
85 PsiBlast_CBE 47.2759% -48 - C2 -4URM 8.6 ?
105 PsiBlast_CBE 47.0854% -46 - C2 -4KFG 7.2 GYRB_ECOLI
84 PsiBlast_CBE 46.9959% -45 - C2 -4URM 8.8 ?
81 PsiBlast_CBE 46.5059% -46 - C2 -4URO 5.3 GYRB_STAAU
88 PsiBlast_CBE 45.7138% -48 - C2 -4KQV 7.3 ?
91 PsiBlast_CBE 45.5138% -54 - C2 -4HY1 7.1 ?
98 PsiBlast_CBE 45.4053% -53 - C2 -4BAE 7.5 GYRB_MYCSM
139 Fugue 44.8651% -39 - C2 -1EI1 7.3 GYRB_ECOLI