@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1189: (2016-03-23 )
MSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVFEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSIRSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQYTLYSKSNEEHGLINDIHKSEQYTNGSFIVDTDDFGEVIDMYIS

Atome Classification :

(49 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_E_5(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3LTN)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAE)
PARC_STRPN
[Raw transfer]
-
CHAIN_H_8(4KOE)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAF)
PARC_STRPN
[Raw transfer]
-
CHAIN_H_8(4KPE)
PARC_STRPN
[Raw transfer]
-
GOL_B_8(3ILW)
GYRA_MYCTU
[Raw transfer]



GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



SM8_A_5(2Y3P)
GYRA_ECOLI
[Raw transfer]



SM8_B_8(2Y3P)
GYRA_ECOLI
[Raw transfer]



NACID_H_8(3K9F)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAD)
PARC_STRPN
[Raw transfer]
-
CHAIN_H_8(4KPF)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3KSA)
PARC_STRPN
[Raw transfer]
-
MFX_H_10(3FOF)
PARC_STRPN
[Raw transfer]



MPD_A_3(3IFZ)
GYRA_MYCTU
[Raw transfer]



MPD_B_5(3IFZ)
GYRA_MYCTU
[Raw transfer]



NACID_F_6(3RAE)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3RAF)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3K9F)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3FOE)
PARC_STRPN
[Raw transfer]
-
CHAIN_F_6(4KPE)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3FOF)
PARC_STRPN
[Raw transfer]
-
NACID_G_5(4I3H)
?
[Raw transfer]
-
NACID_E_3(2XCT)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3LTN)
PARC_STRPN
[Raw transfer]
-
CHAIN_F_6(4KOE)
PARC_STRPN
[Raw transfer]
-
CHAIN_F_6(4KPF)
PARC_STRPN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_E_3(4BUL)
GYRA_STAAN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_G_5(2XCT)
GYRA_STAAN
[Raw transfer]
-
NACID_X_11(2XCT)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3KSA)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]
-
NACID_F_4(5BS3)
GYRA_STAAU
[Raw transfer]
-
NACID_F_4(5BS3)
GYRA_STAAU
[Raw transfer]
-
NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]
-
NACID_G_5(4I3H)
?
[Raw transfer]
-
NACID_F_2(4PLB)
GYRA_STAAU
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_4(2XCS)
GYRA_STAAN
[Raw transfer]
-
NACID_F_2(4PLB)
GYRA_STAAU
[Raw transfer]
-
NACID_F_4(2XCS)
GYRA_STAAN
[Raw transfer]
-
NACID_E_3(4BUL)
GYRA_STAAN
[Raw transfer]
-
NACID_Y_12(2XCT)
GYRA_STAAN
[Raw transfer]
-
58 HHSearch 87.95100% -82 - C3 -2INR - PARC_STAAS -
1 PsiBlast_PDB 87.7799% -81 - C3 -2INR - PARC_STAAS -
10 PsiBlast_PDB 84.8964% -69 - C3 -3RAD 4.8 PARC_STRPN
12 PsiBlast_PDB 84.4864% -69 - C3 -4KOE 4.7 PARC_STRPN
13 PsiBlast_PDB 84.1464% -72 - C3 -4KPE 3.2 PARC_STRPN
9 PsiBlast_PDB 84.0464% -68 - C3 -3RAF 4.5 PARC_STRPN
11 PsiBlast_PDB 83.9464% -70 - C3 -3RAE 3.7 PARC_STRPN
24 PsiBlast_CBE 83.9164% -70 - C3 -4KOE 4.8 PARC_STRPN
23 PsiBlast_CBE 83.8164% -67 - C3 -4KPE 2.9 PARC_STRPN
22 PsiBlast_CBE 83.8064% -69 - C3 -4KPF 4.4 PARC_STRPN
21 PsiBlast_CBE 83.7864% -73 - C3 -4I3H 6.0 ?
2 PsiBlast_PDB 83.7364% -71 - C3 -4I3H 4.0 ?
14 PsiBlast_PDB 83.6864% -72 - C3 -4KPF 4.7 PARC_STRPN
25 PsiBlast_CBE 83.4664% -70 - C3 -3RAF 4.5 PARC_STRPN
27 PsiBlast_CBE 83.1864% -71 - C3 -3RAD 4.0 PARC_STRPN
5 PsiBlast_PDB 82.9264% -69 - C3 -3K9F 4.6 PARC_STRPN
31 PsiBlast_CBE 82.8464% -70 - C3 -3K9F 4.1 PARC_STRPN
26 PsiBlast_CBE 82.8264% -70 - C3 -3RAE 3.1 PARC_STRPN
8 PsiBlast_PDB 82.7764% -70 - C3 -3LTN 4.0 PARC_STRPN
28 PsiBlast_CBE 82.6564% -71 - C3 -3LTN 3.7 PARC_STRPN
29 PsiBlast_CBE 81.8864% -74 - C3 -3KSB 3.1 PARC_STRPN
7 PsiBlast_PDB 81.5764% -73 - C3 -3KSB 4.3 PARC_STRPN
30 PsiBlast_CBE 81.5564% -72 - C3 -3KSA 4.3 PARC_STRPN
6 PsiBlast_PDB 81.5164% -72 - C3 -3KSA 4.9 PARC_STRPN
47 PsiBlast_CBE 76.9145% -66 - C3 -2Y3P 2.6 GYRA_ECOLI (first)
46 PsiBlast_CBE 76.7145% -62 * C3 *2Y3P 3.4 GYRA_ECOLI (first)
38 PsiBlast_CBE 76.5049% -63 - C3 -2XCS 5.5 GYRA_STAAN (first)
40 PsiBlast_CBE 76.4949% -65 - C3 -4PLB 6.2 GYRA_STAAU (first)
18 PsiBlast_PDB 76.4949% -66 - C3 -4BUL 5.5 GYRA_STAAN (first)
37 PsiBlast_CBE 76.1249% -63 - C3 -2XCT 3.4 GYRA_STAAN (first)
34 PsiBlast_CBE 76.1049% -66 - C3 -4BUL 5.0 GYRA_STAAN (first)
20 PsiBlast_PDB 75.7849% -67 - C3 -5BS3 3.1 GYRA_STAAU (first)
19 PsiBlast_PDB 75.6949% -65 - C3 -4PLB 5.1 GYRA_STAAU (first)
16 PsiBlast_PDB 75.6249% -64 - C3 -2XCS 3.3 GYRA_STAAN (first)
39 PsiBlast_CBE 75.5149% -63 - C3 -5BS3 6.1 GYRA_STAAU (first)
44 PsiBlast_CBE 75.3149% -66 - C3 -2XCR 4.2 GYRA_STAAN (first)
36 PsiBlast_CBE 75.0849% -65 - C3 -2XCT 2.8 GYRA_STAAN (first)
43 PsiBlast_CBE 75.0649% -61 - C3 -2XCR 4.9 GYRA_STAAN (first)
35 PsiBlast_CBE 74.6549% -63 - C3 -2XCT 3.5 GYRA_STAAN (first)
41 PsiBlast_CBE 74.4649% -65 - C3 -2XCR 3.9 GYRA_STAAN (first)
48 PsiBlast_CBE 74.3146% -61 - C3 -3IFZ 2.9 GYRA_MYCTU
49 PsiBlast_CBE 74.1846% -63 - C3 -3IFZ 3.3 GYRA_MYCTU
17 PsiBlast_PDB 74.0749% -61 - C3 -2XCT 4.5 GYRA_STAAN (first)
42 PsiBlast_CBE 73.9849% -61 - C3 -2XCR 2.5 GYRA_STAAN (first)
51 PsiBlast_CBE 73.7546% -66 - C3 -3ILW 2.8 GYRA_MYCTU
60 HHSearch 73.6847% -66 - C3 -3ILW 2.8 GYRA_MYCTU
50 PsiBlast_CBE 73.4546% -66 - C3 -3ILW 2.3 GYRA_MYCTU
3 PsiBlast_PDB 71.8764% -70 - C3 -3FOE 4.0 PARC_STRPN
4 PsiBlast_PDB 71.1364% -70 - C3 -3FOF 3.3 PARC_STRPN