@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1228: (2016-03-23 )
MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVKDADVAIDFSNPNLLFPLLDEEFHLPLVVATTGEKEKLLNKLDELSQNMPVFFSANMSYGVHALTKILAAAVPLLDDFDIELTEAHHNKKVDAPSGTLEKLYDVIVSLKENVTPVYDRHELNEKRQPQDIGIHSIRGGTIVGEHEVLFAGTDETIQITHRAQSKDIFANGAIQAAERLVNKPNGFYTFDNL

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_D_12(1ARZ)
DAPB_ECOLI
[Raw transfer]



GOL_A_9(3QY9)
DAPB_STAAC
[Raw transfer]



GOL_A_9(3QY9)
DAPB_STAAC
[Raw transfer]



GOL_A_9(3QY9)
DAPB_STAAC
[Raw transfer]



NAD_B_8(1ARZ)
DAPB_ECOLI
[Raw transfer]



NAD_C_10(1ARZ)
DAPB_ECOLI
[Raw transfer]



PG4_C_22(1VM6)
DAPB_THEMA
[Raw transfer]



PGE_B_8(4YWJ)
DAPB_PSEAE
[Raw transfer]
52 Fugue 99.6499%-135 - C3 -3QY9 1.7 DAPB_STAAC
1 PsiBlast_PDB 99.3499%-135 - C3 -3QY9 1.7 DAPB_STAAC
23 PsiBlast_CBE 98.1099%-127 - C3 -3QY9 - DAPB_STAAC -
21 PsiBlast_CBE 97.9699%-132 - C3 -3QY9 - DAPB_STAAC -
22 PsiBlast_CBE 97.8999%-129 - C3 -3QY9 - DAPB_STAAC -
35 HHSearch 96.6996%-130 - C3 -3QY9 1.7 DAPB_STAAC
32 HHSearch 72.7041%-106 - C3 -1VM6 - DAPB_THEMA -
25 PsiBlast_CBE 72.4135%-110 - C3 -1VM6 2.0 DAPB_THEMA
26 PsiBlast_CBE 71.9135%-103 - C3 -1VM6 - DAPB_THEMA -
2 PsiBlast_PDB 71.2535%-100 - C3 -1VM6 - DAPB_THEMA -
24 PsiBlast_CBE 71.1635%-102 - C3 -1VM6 - DAPB_THEMA -
34 HHSearch 71.0731%-105 - C3 -1DIH - DAPB_ECOLI -
28 PsiBlast_CBE 68.1639%-113 - C3 -4YWJ 1.7 DAPB_PSEAE
4 PsiBlast_PDB 67.1039%-114 - C3 -4YWJ - DAPB_PSEAE -
3 PsiBlast_PDB 66.4539%-101 - C3 -4F3Y - DAPB_BURTA -
33 HHSearch 65.5322% -97 * C3 *1P9L - DAPB_MYCTU -
27 PsiBlast_CBE 64.6839%-106 - C3 -4F3Y - DAPB_BURTA -
8 PsiBlast_PDB 62.0337% -90 - C3 -1DRV - DAPB_ECOLI -
6 PsiBlast_PDB 61.3437% -94 - C3 -1DIH - DAPB_ECOLI -
7 PsiBlast_PDB 61.3037% -90 - C3 -1DRU - DAPB_ECOLI -
31 PsiBlast_CBE 58.6637% -84 - C3 -1ARZ 5.7 DAPB_ECOLI
30 PsiBlast_CBE 58.3737% -81 - C3 -1ARZ 5.5 DAPB_ECOLI
29 PsiBlast_CBE 58.2537% -82 - C3 -1ARZ 6.2 DAPB_ECOLI