@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1234: (2016-03-23 )
MKQGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQDGYKSLEEGQAVEFEVVEGDRGPQAANVVKL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_R_3(3PF4)
CSPB_BACSU
[Raw transfer]

-

TRS_B_6(1C9O)
CSPB_BACCL
[Raw transfer]




TRS_A_7(1C9O)
CSPB_BACCL
[Raw transfer]




TRS_A_7(1C9O)
CSPB_BACCL
[Raw transfer]




CHAIN_S_4(3PF5)
CSPB_BACSU
[Raw transfer]

-

CHAIN_R_3(3PF4)
CSPB_BACSU
[Raw transfer]

-

CHAIN_R_3(3PF5)
CSPB_BACSU
[Raw transfer]

-

NACID_B_1(2ES2)
CSPB_BACSU
[Raw transfer]

-

21 PsiBlast_CBE 91.8076%-100 - C6 -3PF5 6.9 CSPB_BACSU
4 PsiBlast_PDB 90.7076%-105 - C6 -1CSQ - CSPB_BACSU -
10 PsiBlast_PDB 90.6175%-105 - C6 -2I5M - CSPB_BACSU -
8 PsiBlast_PDB 90.5876% -98 - C6 -3PF5 2.8 CSPB_BACSU
3 PsiBlast_PDB 90.5076% -99 - C6 -1CSP - CSPB_BACSU -
11 PsiBlast_PDB 90.4177%-121 - C6 -2I5L - CSPB_BACSU -
24 PsiBlast_CBE 89.7272%-109 - C6 -1C9O 2.1 CSPB_BACCL
54 HHSearch 89.2273%-110 - C6 -1C9O 2.1 CSPB_BACCL
7 PsiBlast_PDB 89.2276% -99 - C6 -3PF4 Error CSPB_BACSU
13 PsiBlast_PDB 88.9272%-110 - C6 -1C9O 2.1 CSPB_BACCL
19 PsiBlast_PDB 88.8664%-120 - C6 -1MJC - CSPA_ECOLI -
22 PsiBlast_CBE 88.5576% -94 - C6 -3PF4 7.2 CSPB_BACSU
15 PsiBlast_PDB 88.4172%-105 - C6 -1I5F - CSPB_BACCL -
9 PsiBlast_PDB 88.2574%-106 - C6 -1HZ9 - CSPB_BACCL -
12 PsiBlast_PDB 87.3673%-107 - C6 -1HZC - CSPB_BACCL -
16 PsiBlast_PDB 87.0972%-104 - C6 -1HZB - CSPB_BACCL -
1 PsiBlast_PDB 87.0376%-106 - C6 -2ES2 9.6 CSPB_BACSU
25 PsiBlast_CBE 86.8572%-102 - C6 -1HZB - CSPB_BACCL -
55 HHSearch 86.2161%-100 - C6 -3I2Z - ? -
2 PsiBlast_PDB 86.1076% -97 - C6 -2F52 - CSPB_BACSU -