@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1290: (2016-03-24 )
MDKSLFEQARPILEQIQDNGFEAYYVGGSVRDYVMGRNIHDIDITTSATPDEIESIFSHTIPVGKEHGTINVVFNDENYEVTTFRAEEDYVDHRRPSGVTFVRDLYEDLQRRDFTMNAIAMDTAYKLYDYFDGQQDINNRIIRTVGIAEERFQEDALRMIRCLRFQSQLSFDIAMETFEAMRTQMADIKFLSIERIVIELTKLMRGINVEESFNHLKSLKAFNYMPYFEQLDMNQINVTEPIDLELLIAIVSVKFDINYSLKPLKLSNRQVKDINQYIQIMNALPSIITKEQLKMFVYDYDTNLIKNVMVAADVLKANDIQGHEPLIVNLQTIDETLHRLPMHNRKDMMVNGGVLMAHLNAKSGPWLKDVLRQIEIAIVTGKVSNEETEILKWVDNHVKI

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_7(1MIW)
CCA_GEOSE
[Raw transfer]



ATP_B_5(4WC0)
?
[Raw transfer]



APC_E_5(1VFG)
?
[Raw transfer]



ATP_A_3(3AQN)
?
[Raw transfer]



ATP_A_3(4WC0)
?
[Raw transfer]



APC_F_6(1VFG)
?
[Raw transfer]



CTP_B_8(1MIY)
CCA_GEOSE
[Raw transfer]



ATP_B_5(3AQN)
?
[Raw transfer]



CTP_B_4(4WC1)
?
[Raw transfer]



CTP_A_3(4WC5)
?
[Raw transfer]



ATP_A_3(4WC6)
?
[Raw transfer]



CTP_A_3(4WC7)
?
[Raw transfer]



ATP_A_3(4WC4)
?
[Raw transfer]



CTP_A_3(4WC1)
?
[Raw transfer]



APC_A_3(4WC2)
?
[Raw transfer]



GOL_B_5(3AQL)
?
[Raw transfer]
3 PsiBlast_PDB 95.7136%-103 - C3 -1MIW - CCA_GEOSE -
2 PsiBlast_PDB 95.5136%-104 - C3 -1MIV - CCA_GEOSE -
29 HHSearch 95.4235% -97 - C3 -1MIW 4.8 CCA_GEOSE
1 PsiBlast_PDB 95.3737%-104 - C3 -1MIY - CCA_GEOSE -
21 PsiBlast_CBE 94.6437%-102 - C3 -1MIY 4.5 CCA_GEOSE
54 Fugue 74.3423% -68 - C3 -3AQL - ? -
32 HHSearch 73.8226% -90 - C3 -3AQL - ? -
22 PsiBlast_CBE 71.7133% -94 - C3 -4X4W - TRNT1_HUMAN -
23 PsiBlast_CBE 70.9431% -90 - C3 -3AQM - ? -
31 HHSearch 70.1619% -86 * C3 *3WFO - ? -
52 Fugue 70.1427% -72 - C3 -1OU5 - TRNT1_HUMAN -
33 HHSearch 70.0318% -82 - C3 -3WFP - ? -
5 PsiBlast_PDB 69.7031% -93 - C3 -3AQM - ? -
4 PsiBlast_PDB 69.4033% -92 - C3 -1OU5 - TRNT1_HUMAN -
30 HHSearch 68.7620% -66 - C3 -3H38 - ? -
25 PsiBlast_CBE 63.7834% -83 - C3 -3AQL 3.2 ?
24 PsiBlast_CBE 62.8634% -86 - C3 -3AQN 4.3 ?
6 PsiBlast_PDB 62.0134% -72 - C3 -3AQK - ? -
53 Fugue 61.8019% -74 - C3 -1VFG - ? -
8 PsiBlast_PDB 61.6634% -91 - C3 -3AQN 4.0 ?
18 PsiBlast_PDB 55.2331% -66 - C3 -4WC6 4.7 ?
26 PsiBlast_CBE 55.0631% -66 - C3 -4WC1 3.7 ?
16 PsiBlast_PDB 54.8831% -67 - C3 -4WC4 4.4 ?
17 PsiBlast_PDB 54.5731% -67 - C3 -4WC5 4.8 ?
12 PsiBlast_PDB 54.3631% -70 - C3 -4WC0 4.6 ?
13 PsiBlast_PDB 54.1431% -66 - C3 -4WC1 4.3 ?
19 PsiBlast_PDB 54.0831% -66 - C3 -4WC7 3.8 ?
28 PsiBlast_CBE 54.0631% -68 - C3 -1VFG 4.6 ?
14 PsiBlast_PDB 53.7331% -66 - C3 -4WC2 4.6 ?
27 PsiBlast_CBE 53.4631% -66 - C3 -4WC0 4.8 ?
10 PsiBlast_PDB 53.2531% -69 - C3 -1VFG 4.8 ?