@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1309: (2016-03-24 )
MKAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNEDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIGTVVLPDADLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAMVSQIK

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

C5P_H_8(2H92)
KCY_STAAW
[Raw transfer]



C5P_G_7(2H92)
KCY_STAAW
[Raw transfer]



C5P_I_9(2H92)
KCY_STAAW
[Raw transfer]



C5P_G_7(2H92)
KCY_STAAW
[Raw transfer]



CDP_D_4(2CMK)
KCY_ECOLI
[Raw transfer]



CAR_F_6(1KDR)
KCY_ECOLI
[Raw transfer]



C_H_8(1KDO)
KCY_ECOLI
[Raw transfer]



C_E_5(1KDP)
KCY_ECOLI
[Raw transfer]



C_I_9(1KDO)
KCY_ECOLI
[Raw transfer]



CDP_A_2(3AKC)
KCY_THET8
[Raw transfer]



CAR_G_7(1KDR)
KCY_ECOLI
[Raw transfer]



CDP_A_2(3AKD)
KCY_THET8
[Raw transfer]



C_F_6(1KDP)
KCY_ECOLI
[Raw transfer]



DOC_F_6(1KDT)
KCY_ECOLI
[Raw transfer]



C5P_C_9(4DIE)
?
[Raw transfer]



DC_C_3(2FEO)
KCY_ECOLI
[Raw transfer]



C5P_A_2(3AKE)
KCY_THET8
[Raw transfer]



DOC_G_7(1KDT)
KCY_ECOLI
[Raw transfer]



C5P_A_2(3AKE)
KCY_THET8
[Raw transfer]



C5P_B_7(4DIE)
?
[Raw transfer]



C5P_A_5(4DIE)
?
[Raw transfer]



C5P_D_11(4DIE)
?
[Raw transfer]



DPO_A_2(3R20)
?
[Raw transfer]



DPO_A_2(3R20)
?
[Raw transfer]
21 PsiBlast_CBE 94.90100% -90 - C1 -2H92 8.9 KCY_STAAW
1 PsiBlast_PDB 94.21100% -87 - C1 -2H92 8.0 KCY_STAAW
22 PsiBlast_CBE 93.37100% -88 - C1 -2H92 7.9 KCY_STAAW
102 HHSearch 91.9898% -84 - C1 -2H92 8.0 KCY_STAAW
2 PsiBlast_PDB 81.5551% -80 - C1 -1Q3T - KCY_STRPN -
4 PsiBlast_PDB 76.0541% -94 - C1 -4DIE 5.2 ?
3 PsiBlast_PDB 75.6841% -93 - C1 -3R8C - ? -
24 PsiBlast_CBE 73.5541% -86 - C1 -4DIE 5.5 ?
23 PsiBlast_CBE 73.1341% -91 - C1 -4DIE 5.5 ?
5 PsiBlast_PDB 72.7138% -82 - C1 -4E22 - KCY_YERPY -
18 PsiBlast_PDB 72.3033% -95 - C1 -3W90 - KCY_THET8 -
122 Fugue 72.0036% -87 - C1 -1CKE - KCY_ECOLI -
25 PsiBlast_CBE 71.9541% -91 - C1 -4DIE 6.0 ?
17 PsiBlast_PDB 71.5633% -87 - C1 -3AKE 6.6 KCY_THET8
103 HHSearch 71.2338% -85 - C1 -1CKE - KCY_ECOLI -
104 HHSearch 71.1637% -74 * C1 *3R20 3.0 ?
16 PsiBlast_PDB 69.5833% -89 - C1 -3AKD 7.6 KCY_THET8
13 PsiBlast_PDB 69.2638% -76 - C1 -2FEM - KCY_ECOLI -
12 PsiBlast_PDB 68.9239% -69 - C1 -1KDT 6.1 KCY_ECOLI
6 PsiBlast_PDB 68.8339% -75 - C1 -1CKE - KCY_ECOLI -
7 PsiBlast_PDB 68.5439% -62 - C1 -3R20 3.0 ?
8 PsiBlast_PDB 68.2939% -71 - C1 -2CMK 5.7 KCY_ECOLI
15 PsiBlast_PDB 67.5633% -83 - C1 -3AKC 9.3 KCY_THET8
26 PsiBlast_CBE 66.8539% -64 - C1 -1KDT 4.9 KCY_ECOLI
29 PsiBlast_CBE 66.3239% -69 - C1 -1KDO 8.3 KCY_ECOLI
28 PsiBlast_CBE 66.2239% -65 - C1 -1KDP 6.1 KCY_ECOLI
9 PsiBlast_PDB 66.0539% -64 - C1 -1KDO 8.3 KCY_ECOLI
11 PsiBlast_PDB 65.9839% -63 - C1 -1KDR 5.3 KCY_ECOLI
10 PsiBlast_PDB 65.9839% -62 - C1 -1KDP 7.7 KCY_ECOLI
27 PsiBlast_CBE 63.8239% -62 - C1 -1KDR 5.1 KCY_ECOLI
106 HHSearch 63.2734% -62 - C1 -3AKE 6.6 KCY_THET8
14 PsiBlast_PDB 62.0638% -64 - C1 -2FEO 4.3 KCY_ECOLI