@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1342: (2016-03-24 )
MTQQIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPTYSLEEFVNSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAINFIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVTYIGPNGAGHYVKMVHNGIEYADMQLIAESYAMMKELLGMSHEDIAQTFKDWNAGELESYLIEITGDIFMKLDENKEALVEKILDTAGQKGTGKWTSINALELGIPLTIITESVFARFISSIKEERVNASKELNGPKASFDGDKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWREGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGFSSSINYYDSYRAADLPANLIQAQRDYFGAHTYERKDKEGVFHTQWIEE

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

6PG_A_3(3FWN)
6PGD_ECOLI
[Raw transfer]




6PG_B_4(2ZYA)
6PGD_ECOLI
[Raw transfer]




6PG_A_2(2IYO)
6PGD_LACLM
[Raw transfer]




6PG_C_3(1PGP)
6PGD_SHEEP
[Raw transfer]




6PG_B_7(2W8Z)
?
[Raw transfer]




GLO_A_3(2ZYD)
6PGD_ECOLI
[Raw transfer]




NDP_G_7(1PGO)
6PGD_SHEEP
[Raw transfer]




ATR_B_4(3FWN)
6PGD_ECOLI
[Raw transfer]




NBP_A_4(1PGN)
6PGD_SHEEP
[Raw transfer]




3PG_A_5(4GWK)
6PGD_HUMAN
[Raw transfer]




2AM_I_9(1PGQ)
6PGD_SHEEP
[Raw transfer]




MES_A_3(4GWG)
6PGD_HUMAN
[Raw transfer]




MES_A_4(4GWK)
6PGD_HUMAN
[Raw transfer]




FLC_E_5(2P4Q)
6PGD1_YEAST
[Raw transfer]




FLC_E_5(2P4Q)
6PGD1_YEAST
[Raw transfer]




TRS_A_4(2W90)
?
[Raw transfer]




22 PsiBlast_CBE 98.1069% -87 - C1 -2W90 2.7 ?
2 PsiBlast_PDB 97.4069% -86 - C1 -2W90 - ? -
1 PsiBlast_PDB 97.3669% -85 - C1 -2W8Z - ? -
62 HHSearch 97.1667% -86 - C1 -2ZYD - 6PGD_ECOLI -
21 PsiBlast_CBE 97.0969% -84 - C1 -2W8Z 2.7 ?
6 PsiBlast_PDB 96.8466% -86 - C1 -2ZYD - 6PGD_ECOLI -
3 PsiBlast_PDB 96.8466% -86 - C1 -2ZYG - ? -
4 PsiBlast_PDB 96.7266% -85 - C1 -3FWN 4.6 6PGD_ECOLI
23 PsiBlast_CBE 96.6166% -84 - C1 -3FWN 6.1 6PGD_ECOLI
24 PsiBlast_CBE 95.8166% -84 - C1 -2ZYD 3.2 6PGD_ECOLI
7 PsiBlast_PDB 95.7965% -86 - C1 -2IYO 3.9 6PGD_LACLM
5 PsiBlast_PDB 95.4566% -85 - C1 -2ZYA - 6PGD_ECOLI -
25 PsiBlast_CBE 95.4366% -83 - C1 -2ZYA 3.9 6PGD_ECOLI
35 PsiBlast_CBE 92.4456% -85 - C1 -2JKV - 6PGD_HUMAN -
13 PsiBlast_PDB 91.8956% -85 - C1 -1PGP 3.2 6PGD_SHEEP
36 PsiBlast_CBE 91.8556% -84 - C1 -2JKV - 6PGD_HUMAN -
32 PsiBlast_CBE 91.7856% -83 - C1 -2JKV - 6PGD_HUMAN -
17 PsiBlast_PDB 91.5756% -84 - C1 -4GWG 2.8 6PGD_HUMAN
18 PsiBlast_PDB 91.4656% -86 - C1 -4GWK 3.4 6PGD_HUMAN
16 PsiBlast_PDB 91.3956% -82 - C1 -2JKV - 6PGD_HUMAN -
12 PsiBlast_PDB 91.3856% -84 - C1 -1PGO 7.7 6PGD_SHEEP
11 PsiBlast_PDB 90.5356% -83 - C1 -1PGN 7.6 6PGD_SHEEP
14 PsiBlast_PDB 90.2756% -84 - C1 -1PGQ 4.6 6PGD_SHEEP
19 PsiBlast_PDB 88.7851% -80 - C1 -2P4Q 3.5 6PGD1_YEAST
60 HHSearch 88.5950% -78 - C1 -2P4Q 3.5 6PGD1_YEAST