@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1377: (2016-03-25 )
MTKIILAADVGGTTCKLGIFTPELEQLHKWSIHTDTSDSTGYTLLKGIYDSFVEKVNENNYNFSNVLGVGIGVPGPVDFEKGTVNGAVNLYWPEKVNVREIFEQFVDCPVYVDNDANIAALGEKHKGAGEGADDVVAITLGTGLGGGIISNGEIVHGHNGSGAEIGHFRADFDQRFKCNCGRSGCIETVASATGVVNLINFYYPKLTFRSSILELIKENKVTAKAVFDAAKAGDQFCIFITEKVANYIGYLCSIISVTSNPKYIVLGGGMSTAGPILIENIKTEYHNLTFAPAQFETEIVQAKLGNDAGITGAAGLIKTYVLDKEGVK

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BMX_A_2(2YI1)

[Raw transfer]



BGC_A_4(3VGL)
?
[Raw transfer]



BM3_A_2(2YHY)

[Raw transfer]



BGC_A_4(3VGL)
?
[Raw transfer]



GLC_C_3(1WOQ)
?
[Raw transfer]



BGC_A_2(3VGM)
?
[Raw transfer]



GOL_A_3(2HOE)
?
[Raw transfer]



GOL_A_2(3MCP)
?
[Raw transfer]



SUC_A_3(2GUP)
?
[Raw transfer]
1 PsiBlast_PDB 97.3839%-117 - C1 -2QM1 - ? -
28 HHSearch 94.1440%-109 - C1 -2QM1 - ? -
25 PsiBlast_CBE 85.2931%-101 - C1 -3VGK - ? -
24 PsiBlast_CBE 84.2031%-100 - C1 -3VGK - ? -
4 PsiBlast_PDB 83.9631% -95 - C1 -3VGM 3.4 ?
22 PsiBlast_CBE 83.4931% -99 - C1 -3VGK - ? -
23 PsiBlast_CBE 83.3931% -97 - C1 -3VGK - ? -
2 PsiBlast_PDB 83.0931% -98 - C1 -3VGK - ? -
3 PsiBlast_PDB 82.6631% -94 - C1 -3VGL 3.0 ?
26 PsiBlast_CBE 82.1431% -96 - C1 -3VGK - ? -
21 PsiBlast_CBE 81.9631% -96 - C1 -3VGK - ? -
27 PsiBlast_CBE 81.6031% -98 - C1 -3VGK - ? -
29 HHSearch 79.2330% -93 - C1 -3VGL 3.0 ?
31 HHSearch 77.9628% -98 - C1 -3VOV - ? -
5 PsiBlast_PDB 76.7028% -94 - C1 -4DB3 - NAGK_VIBVU -
52 Fugue 76.1723%-102 - C1 -1Z05 - ? -
37 HHSearch 74.7128% -97 - C1 -2AP1 - NAGK_SALTY -
30 HHSearch 74.7023%-100 - C1 -1Z6R - MLC_ECOLI -
34 HHSearch 74.4626% -93 * C1 *2AA4 - NANK_ECOLI -
39 HHSearch 72.9624%-108 - C1 -2GUP 1.5 ?
10 PsiBlast_PDB 70.3930%-107 - C1 -2YHY 3.0
11 PsiBlast_PDB 70.0330%-107 - C1 -2YI1 3.8
48 HHSearch 61.1430% -91 - C1 -1WOQ 4.1 ?