@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1390: (2016-03-25 )
MSDNTVKIKKQTIDPTLTLEDVKKQLIEKGKKEGHLSHEEIAEKLQNFDIDSDQMDDFFDQLNDNDISLVNEKDSSDTDEKLNPSDLSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIELAKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_H_8(4OIN)
?
[Raw transfer]
-
NACID_H_8(4OIO)
?
[Raw transfer]
-
NACID_H_8(4G7O)
?
[Raw transfer]
-
NACID_H_8(4OIP)
?
[Raw transfer]
-
NACID_H_13(4G7Z)
?
[Raw transfer]
-
NACID_H_8(4Q5S)
?
[Raw transfer]
-
NACID_H_8(4G7H)
?
[Raw transfer]
-
CHAIN_H_8(4Q4Z)
?
[Raw transfer]
-
NACID_H_8(4OIQ)
?
[Raw transfer]
-
NACID_H_8(4OIR)
?
[Raw transfer]
-
NACID_R_16(4G7H)
?
[Raw transfer]
-
NACID_R_15(4G7Z)
?
[Raw transfer]
-
NACID_R_17(4G7O)
?
[Raw transfer]
-
67 HHSearch 91.1857% -86 - C5 -2A6H - ? -
25 PsiBlast_CBE 88.0167% -92 - C5 -4OIR 10.4 ?
32 PsiBlast_CBE 87.1367% -91 - C5 -4G7O 11.8 ?
33 PsiBlast_CBE 86.9767% -92 - C5 -4G7O 11.1 ?
29 PsiBlast_CBE 86.9467% -95 - C5 -4OIN 10.6 ?
35 PsiBlast_CBE 86.5867% -94 - C5 -4G7H 11.8 ?
37 PsiBlast_CBE 86.5467% -95 - C5 -4Q4Z 10.1 ?
34 PsiBlast_CBE 86.4067% -91 - C5 -4G7H 11.7 ?
31 PsiBlast_CBE 86.3867% -93 - C5 -4G7Z 11.8 ?
26 PsiBlast_CBE 86.3367% -93 - C5 -4OIQ 11.2 ?
30 PsiBlast_CBE 85.9567% -89 - C5 -4G7Z 12.0 ?
27 PsiBlast_CBE 85.8967% -94 - C5 -4OIP 11.8 ?
20 PsiBlast_PDB 85.8767% -99 - C5 -4ZH3 - ? -
19 PsiBlast_PDB 85.8667% -99 - C5 -4ZH2 - ? -
2 PsiBlast_PDB 85.8567%-101 - C5 -4JKR - RPOD_ECOLI -
11 PsiBlast_PDB 85.8167%-100 - C5 -4LK1 - RPOD_ECOLI -
28 PsiBlast_CBE 85.6467% -92 - C5 -4OIO 11.8 ?
12 PsiBlast_PDB 84.9867% -98 - C5 -4LLG - RPOD_ECOLI -
15 PsiBlast_PDB 84.9667% -94 - C5 -4YFK - RPOD_ECOLI -
16 PsiBlast_PDB 84.7667% -99 - C5 -4YFN - RPOD_ECOLI -
36 PsiBlast_CBE 82.7267% -91 - C5 -4Q5S 12.8 ?