@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1391: (2016-03-25 )
MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRNYIGLCPFHDEKTPSFTVSEDKQICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQMIEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKKGYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRTYTGQEPKYLNSPETPIFQKRKLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQLPSGMDPDEYIGKYGNDAFTTFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMKSSILQQKAINDVAPFFNVSPEQLANEIQFNQAPANYYPEDEYGGYDEYGGYIEPEPIGMAQFDNLSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISDAVQYVNSNELRETLISLEQYNLNDEPYENEIDDYVNVINEKGQETIESLNHKLREATRIGDVELQKYYLQQIVAKNKERM

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GTP_A_5(4EDK)
DNAG_STAAU
[Raw transfer]




GTP_A_5(4EDK)
DNAG_STAAU
[Raw transfer]




UTP_A_5(4EDR)
DNAG_STAAU
[Raw transfer]




CTP_A_2(4EE1)
DNAG_STAAU
[Raw transfer]




ATP_A_4(4EDG)
DNAG_STAAU
[Raw transfer]




0O2_A_3(4EDV)
DNAG_STAAU
[Raw transfer]




G4P_A_3(4EDT)
DNAG_STAAU
[Raw transfer]




NACID_C_1(3B39)
DNAG_ECOLI
[Raw transfer]

-

NACID_D_2(3B39)
DNAG_ECOLI
[Raw transfer]

-

7 PsiBlast_PDB 95.7999%-107 - C2 -4EE1 6.1 DNAG_STAAU
6 PsiBlast_PDB 95.5999%-106 - C2 -4EDV 4.9 DNAG_STAAU
2 PsiBlast_PDB 95.5699%-107 - C2 -4EDG 6.7 DNAG_STAAU
5 PsiBlast_PDB 95.3899%-106 - C2 -4EDT 4.5 DNAG_STAAU
4 PsiBlast_PDB 95.2599%-107 - C2 -4EDR 6.9 DNAG_STAAU
3 PsiBlast_PDB 95.2199%-106 - C2 -4EDK 7.2 DNAG_STAAU
1 PsiBlast_PDB 95.1199%-109 - C2 -4E2K - DNAG_STAAU -
47 Fugue 95.0799%-106 - C2 -4EDK 7.2 DNAG_STAAU
22 HHSearch 77.0731% -86 - C2 -2AU3 - DNAG_AQUAE -
8 PsiBlast_PDB 73.7833% -74 - C2 -2AU3 - DNAG_AQUAE -
23 HHSearch 67.1527% -88 - C2 -1DD9 - DNAG_ECOLI -
48 Fugue 66.8427% -84 - C2 -1DD9 - DNAG_ECOLI -
20 PsiBlast_CBE 62.1434% -84 - C2 -3B39 4.2 DNAG_ECOLI
10 PsiBlast_PDB 61.2134% -84 - C2 -1DD9 - DNAG_ECOLI -
11 PsiBlast_PDB 60.0834% -81 - C2 -1DDE - DNAG_ECOLI -
9 PsiBlast_PDB 59.4534% -84 - C2 -3B39 4.9 DNAG_ECOLI
25 HHSearch 50.5853% -73 - C2 -1D0Q - DNAG_GEOSE -
21 PsiBlast_CBE 49.4353% -72 - C2 -1D0Q - DNAG_GEOSE -
13 PsiBlast_PDB 49.3553% -69 - C2 -1D0Q - DNAG_GEOSE -
49 Fugue 48.5050% -63 - C2 -1D0Q - DNAG_GEOSE -