@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1394: (2016-03-25 )
MAKDMDTIVSLAKHRGFVFPGSDIYGGLSNTWDYGPLGVELKNNVKKAWWQKFITQSPFNVGIDAAILMNPKVWEASGHLNNFNDPMIDNKDSKIRYRADKLIEDYMQDVKGDENFIADGLSFEQMKKIIDDEGIVCPVSKTANWTEIRQFNLMFKTFQGVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGNFIFRTREFEQMELEFFCKPGEEIEWQNYWKTFASDWLTSLNMSSENMRLRDHDEDELSHYSNATTDIEYKFPFGWGELWGIASRTDFDLRKHAEHSGEDFRYHDPETNEKYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPALAPYKAAILPLSKKLSGEAIKIFEQLSSKFSIDFDESQSIGKRYRRQDEIGTPYCVTFDFDSLEDNQVTVRDRDSMEQVRMPISELEAFLTEKTKF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GAP_B_4(1GGM)
SYG_THET8
[Raw transfer]



ATP_B_4(1B76)
SYG_THET8
[Raw transfer]



B4P_A_2(2ZT5)
SYG_HUMAN
[Raw transfer]



AMP_A_3(4QEI)
SYG_HUMAN
[Raw transfer]
24 HHSearch 91.4746% -73 - C1 -1ATI - SYG_THET8 -
1 PsiBlast_PDB 91.2741% -74 - C1 -1ATI - SYG_THET8 -
21 PsiBlast_CBE 91.2041% -74 - C1 -1ATI - SYG_THET8 -
23 PsiBlast_CBE 89.0840% -69 - C1 -1B76 4.8 SYG_THET8
22 PsiBlast_CBE 88.4940% -70 - C1 -1GGM 5.9 SYG_THET8
25 HHSearch 84.0335% -66 - C1 -2ZT5 8.9 SYG_HUMAN
44 Fugue 83.8533% -69 - C1 -2PMF - SYG_HUMAN -
47 Fugue 79.0836% -60 - C1 -4QEI 6.1 SYG_HUMAN
45 Fugue 73.3648% -66 - C1 -1ATI - SYG_THET8 -
27 HHSearch 61.1523% -54 - C1 -1G5H - DPOG2_MOUSE -
26 HHSearch 60.1724% -56 - C1 -3IKL - DPOG2_HUMAN -
5 PsiBlast_PDB 58.4623% -60 - C1 -1G5I - DPOG2_MOUSE -
6 PsiBlast_PDB 57.4622% -57 - C1 -1G5H - DPOG2_MOUSE -
31 HHSearch 55.0018% -54 - C1 -1HC7 - SYP_THET8 -
30 HHSearch 54.9618% -54 - C1 -3IAL - ? -
38 HHSearch 54.7315% -57 - C1 -2J3L - SYP_ENTFA -
28 HHSearch 53.8217% -51 - C1 -1NJ1 - SYP_METTH -
29 HHSearch 53.5319% -50 - C1 -1NJ8 - SYP_METJA -
3 PsiBlast_PDB 51.9722% -45 - C1 -2G4C - DPOG2_HUMAN -
2 PsiBlast_PDB 50.8922% -47 - C1 -3IKM - ? -