@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1424: (2016-03-25 )
MKFAVIGNPISHSLSPVMHRANFNSLGLDDTYEALNIPIEDFHLIKEIISKKELDGFNITIPHKERIIPYLDYVDEQAINAGAVNTVLIKDGKWIGYNTDGIGYVKGLHSVYPDLENAYILILGAGGASKGIAYELAKFVKPKLTVANRTMARFESWNLNINQISLADAEKYLAEFDIVINTTPAGMAGNNESIINLKHLSPNTLMSDIVYIPYKTPILEEAERKGNHIYNGLDMFVYQGAESFKIWTNKDADINSMKTAVLQQLKGE

Atome Classification :

(58 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_D_23(1NYT)
AROE_ECOLI
[Raw transfer]




NAP_C_9(2HK9)
AROE_AQUAE
[Raw transfer]




NAP_A_19(1NYT)
AROE_ECOLI
[Raw transfer]




NAP_B_21(1NYT)
AROE_ECOLI
[Raw transfer]




NAP_B_6(1NVT)
AROE_METJA
[Raw transfer]




NAP_C_22(1NYT)
AROE_ECOLI
[Raw transfer]




NAP_A_19(1NYT)
AROE_ECOLI
[Raw transfer]




NAP_A_6(2O7S)
DHQSD_ARATH
[Raw transfer]




NAP_A_5(1NVT)
AROE_METJA
[Raw transfer]




NAP_A_5(1NVT)
AROE_METJA
[Raw transfer]




NAD_A_5(3TNL)
AROE_LISMO
[Raw transfer]




NAP_B_7(2HK9)
AROE_AQUAE
[Raw transfer]




NAD_C_10(3TNL)
AROE_LISMO
[Raw transfer]




NAP_D_11(2HK9)
AROE_AQUAE
[Raw transfer]




NAD_D_13(3TNL)
AROE_LISMO
[Raw transfer]




NAD_B_8(3TNL)
AROE_LISMO
[Raw transfer]




NDP_B_6(3PHI)
AROE_HELPY
[Raw transfer]




ATR_A_5(2HK9)
AROE_AQUAE
[Raw transfer]




NAD_B_5(3T4E)
YDIB_SALTY
[Raw transfer]




ATR_A_5(2HK9)
AROE_AQUAE
[Raw transfer]




NAD_A_3(3T4E)
YDIB_SALTY
[Raw transfer]




NDP_B_6(3SEF)
AROE_VIBCH
[Raw transfer]




NDP_A_4(3PHI)
AROE_HELPY
[Raw transfer]




ATR_C_3(1P77)
AROE_HAEIN
[Raw transfer]




ATR_C_3(1P77)
AROE_HAEIN
[Raw transfer]




SKM_D_8(3PGJ)
AROE_VIBCH
[Raw transfer]




SKM_B_4(4FR5)
AROE_HELPY
[Raw transfer]




SKM_A_2(3PHH)
AROE_HELPY
[Raw transfer]




DHK_A_5(2O7S)
DHQSD_ARATH
[Raw transfer]




SKM_A_2(3PHH)
AROE_HELPY
[Raw transfer]




SKM_A_2(4FOS)
AROE_HELPY
[Raw transfer]




SKM_A_6(3TNL)
AROE_LISMO
[Raw transfer]




SKM_B_6(3PGJ)
AROE_VIBCH
[Raw transfer]




DHK_B_4(3PHJ)
AROE_HELPY
[Raw transfer]




SKM_A_3(4FSH)
AROE_HELPY
[Raw transfer]




DHK_A_3(3PHJ)
AROE_HELPY
[Raw transfer]




SKM_B_4(4FQ8)
AROE_HELPY
[Raw transfer]




SKM_C_7(3PGJ)
AROE_VIBCH
[Raw transfer]




SKM_B_8(2D5C)
AROE_THET8
[Raw transfer]




SKM_A_5(2EV9)
AROE_THET8
[Raw transfer]




SKM_E_5(2GPT)
DHQSD_ARATH
[Raw transfer]




SKM_A_5(3PGJ)
AROE_VIBCH
[Raw transfer]




SKM_B_6(2EV9)
AROE_THET8
[Raw transfer]




SKM_A_7(2D5C)
AROE_THET8
[Raw transfer]




SKM_C_8(3SEF)
AROE_VIBCH
[Raw transfer]




SKM_A_3(4FR5)
AROE_HELPY
[Raw transfer]




SKM_A_7(2D5C)
AROE_THET8
[Raw transfer]




SKM_A_3(4FQ8)
AROE_HELPY
[Raw transfer]




DTV_A_20(1NYT)
AROE_ECOLI
[Raw transfer]




2 PsiBlast_PDB 98.7071%-114 - C4 -3DOO - AROE_STAEQ -
81 HHSearch 98.5072%-111 - C4 -3DON - AROE_STAEQ -
1 PsiBlast_PDB 98.1871%-111 - C4 -3DON - AROE_STAEQ -
93 HHSearch 83.9340%-101 - C4 -2EGG - AROE_GEOKA -
3 PsiBlast_PDB 82.8639%-102 - C4 -2EGG - AROE_GEOKA -
84 HHSearch 80.3339% -97 - C4 -1NVT 8.2 AROE_METJA
4 PsiBlast_PDB 79.8737% -99 - C4 -1NVT 8.2 AROE_METJA
21 PsiBlast_CBE 79.4737% -97 - C4 -1NVT 6.6 AROE_METJA
5 PsiBlast_PDB 79.1935% -99 - C4 -2HK7 - AROE_AQUAE -
24 PsiBlast_CBE 78.3535% -96 - C4 -2HK9 8.6 AROE_AQUAE
25 PsiBlast_CBE 77.7235%-101 - C4 -2HK7 - AROE_AQUAE -
7 PsiBlast_PDB 77.3435% -97 - C4 -2HK9 5.7 AROE_AQUAE
6 PsiBlast_PDB 77.0535% -94 - C4 -2HK8 - AROE_AQUAE -
23 PsiBlast_CBE 76.9235% -94 - C4 -2HK9 7.5 AROE_AQUAE
92 HHSearch 76.2636% -96 - C4 -2HK9 5.7 AROE_AQUAE
22 PsiBlast_CBE 76.0935% -91 - C4 -2HK9 8.7 AROE_AQUAE
79 HHSearch 73.1930% -87 - C4 -3JYO - AROE_CORGL -
67 Fugue 72.4129% -86 - C4 -3JYO - AROE_CORGL -
27 PsiBlast_CBE 72.3134% -76 - C4 -3TOZ - AROE_LISMO -
78 HHSearch 72.2035% -79 * C4 *3TNL 3.5 AROE_LISMO
35 PsiBlast_CBE 72.1234% -73 - C4 -3TNL 8.4 AROE_LISMO
33 PsiBlast_CBE 72.1034% -75 - C4 -3TNL 8.5 AROE_LISMO
9 PsiBlast_PDB 71.6334% -74 - C4 -3TNL 7.4 AROE_LISMO
41 PsiBlast_CBE 71.3633% -81 - C4 -1NYT 7.6 AROE_ECOLI
34 PsiBlast_CBE 71.2734% -76 - C4 -3TNL 8.1 AROE_LISMO
40 PsiBlast_CBE 71.0933% -79 - C4 -1NYT 6.4 AROE_ECOLI
64 PsiBlast_CBE 70.2032% -81 - C4 -3T4E 6.3 YDIB_SALTY
42 PsiBlast_CBE 70.0733% -77 - C4 -1NYT 9.2 AROE_ECOLI
80 HHSearch 70.0433% -83 - C4 -2D5C 3.6 AROE_THET8
63 PsiBlast_CBE 69.7032% -81 - C4 -3T4E 6.8 YDIB_SALTY
89 HHSearch 69.4136% -84 - C4 -2O7S 8.0 DHQSD_ARATH
14 PsiBlast_PDB 69.0333% -78 - C4 -1NYT 8.9 AROE_ECOLI
66 PsiBlast_CBE 68.9432% -86 - C4 -1P77 4.3 AROE_HAEIN
87 HHSearch 65.4033% -78 - C4 -1NYT 8.9 AROE_ECOLI
49 PsiBlast_CBE 65.2132% -81 - C4 -3PGJ 3.8 AROE_VIBCH
86 HHSearch 64.9530% -81 - C4 -1P77 4.0 AROE_HAEIN
48 PsiBlast_CBE 64.4932% -71 - C4 -3PGJ 3.2 AROE_VIBCH
37 PsiBlast_CBE 64.3032% -68 - C4 -2D5C 3.8 AROE_THET8
36 PsiBlast_CBE 64.0432% -65 - C4 -2EV9 3.5 AROE_THET8
13 PsiBlast_PDB 63.9032% -65 - C4 -2EV9 3.4 AROE_THET8
46 PsiBlast_CBE 63.8732% -74 - C4 -3SEF 4.9 AROE_VIBCH
12 PsiBlast_PDB 63.8032% -71 - C4 -2D5C 3.5 AROE_THET8
20 PsiBlast_PDB 63.7532% -76 - C4 -3PGJ 3.2 AROE_VIBCH
50 PsiBlast_CBE 63.7032% -75 - C4 -3PGJ 3.2 AROE_VIBCH
45 PsiBlast_CBE 61.5832% -84 - C4 -3SEF 2.5 AROE_VIBCH
58 PsiBlast_CBE 60.9033% -76 - C4 -4FQ8 3.6 AROE_HELPY
57 PsiBlast_CBE 59.6934% -71 - C4 -4FOS 3.4 AROE_HELPY
62 PsiBlast_CBE 59.6132% -71 - C4 -2GPT 3.6 DHQSD_ARATH
55 PsiBlast_CBE 59.6034% -76 - C4 -3PHI 6.0 AROE_HELPY
65 PsiBlast_CBE 59.4733% -79 - C4 -4FSH 3.7 AROE_HELPY
54 PsiBlast_CBE 59.1934% -75 - C4 -3PHI 6.6 AROE_HELPY
60 PsiBlast_CBE 59.1033% -71 - C4 -4FR5 3.3 AROE_HELPY
61 PsiBlast_CBE 58.7933% -71 - C4 -4FR5 3.3 AROE_HELPY
56 PsiBlast_CBE 58.6034% -72 - C4 -3PHH 4.0 AROE_HELPY
52 PsiBlast_CBE 58.1134% -78 - C4 -3PHJ 4.0 AROE_HELPY
53 PsiBlast_CBE 57.9934% -78 - C4 -3PHJ 4.0 AROE_HELPY
59 PsiBlast_CBE 57.6033% -72 - C4 -4FQ8 3.3 AROE_HELPY
91 HHSearch 56.9931% -72 - C4 -3PHH 4.0 AROE_HELPY