@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1446: (2016-03-25 )
MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNSQKAIRTNDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRIEGNFWDIGEGPSGPNTEIFYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLKVDMTTFESEMQQQRDRARQARQNSQSMQVQSEVLKNITSASTFVGYDTATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAPFSIELCGGIHVRNTSEIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQMKVKSDDQVVEKLTQLQDEEKALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIVGGKGGGRPDMAQGGGTQPENISKSLSFIKDYIKNL

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

A5A_A_2(3HXU)
SYA_ECOLI
[Raw transfer]



5AL_A_2(3HXY)
SYA_ECOLI
[Raw transfer]



SSA_A_2(3HXW)
SYA_ECOLI
[Raw transfer]



SSA_A_3(3HY1)
SYA_ECOLI
[Raw transfer]



G5A_A_3(3HY0)
SYA_ECOLI
[Raw transfer]



G5A_A_3(3HY0)
SYA_ECOLI
[Raw transfer]



G5A_A_4(3HXV)
SYA_ECOLI
[Raw transfer]



G5A_B_7(3HY0)
SYA_ECOLI
[Raw transfer]



ACP_A_2(3HXX)
SYA_ECOLI
[Raw transfer]



ATP_B_10(1YFR)
SYA_AQUAE
[Raw transfer]



ATP_A_9(1YFR)
SYA_AQUAE
[Raw transfer]



ALA_D_4(1YFS)
SYA_AQUAE
[Raw transfer]



GLY_B_2(1YFT)
SYA_AQUAE
[Raw transfer]



ALA_C_3(1YFS)
SYA_AQUAE
[Raw transfer]



ALA_C_3(1YFS)
SYA_AQUAE
[Raw transfer]



SER_B_2(1YGB)
SYA_AQUAE
[Raw transfer]
28 HHSearch 91.9627% -68 * C2 *3WQY - SYA_ARCFU -
15 PsiBlast_PDB 89.0626% -67 - C2 -3WQY - SYA_ARCFU -
16 PsiBlast_PDB 88.6226% -70 - C2 -3WQZ - SYA_ARCFU -
17 PsiBlast_PDB 83.4326% -66 - C2 -2ZZF - SYA_PYRHO -
31 HHSearch 83.2250% -74 - C2 -1YFS 2.6 SYA_AQUAE
30 HHSearch 83.1829% -67 - C2 -2ZTG - SYA_ARCFU -
21 PsiBlast_CBE 83.0548% -75 - C2 -1YFS 2.5 SYA_AQUAE
2 PsiBlast_PDB 82.8548% -76 - C2 -1YFS 2.6 SYA_AQUAE
3 PsiBlast_PDB 82.6748% -74 - C2 -1YFT 3.1 SYA_AQUAE
32 HHSearch 82.4549% -72 - C2 -3HY0 5.7 SYA_ECOLI
4 PsiBlast_PDB 82.2348% -74 - C2 -1YGB 3.5 SYA_AQUAE
18 PsiBlast_PDB 82.2126% -62 - C2 -2ZZG - SYA_PYRHO -
1 PsiBlast_PDB 82.1748% -74 - C2 -1YFR 2.9 SYA_AQUAE
5 PsiBlast_PDB 81.8848% -77 - C2 -3HTZ - SYA_AQUAE -
26 PsiBlast_CBE 81.8647% -74 - C2 -3HXZ - SYA_ECOLI -
22 PsiBlast_CBE 81.5248% -72 - C2 -1YFR 5.3 SYA_AQUAE
6 PsiBlast_PDB 81.5047% -74 - C2 -3HXU 8.8 SYA_ECOLI
8 PsiBlast_PDB 81.4947% -73 - C2 -3HXW 8.7 SYA_ECOLI
11 PsiBlast_PDB 81.4647% -73 - C2 -3HXZ - SYA_ECOLI -
12 PsiBlast_PDB 81.4247% -74 - C2 -3HY0 5.7 SYA_ECOLI
10 PsiBlast_PDB 81.3547% -76 - C2 -3HXY 8.7 SYA_ECOLI
9 PsiBlast_PDB 81.2647% -76 - C2 -3HXX 10.1 SYA_ECOLI
7 PsiBlast_PDB 81.1747% -73 - C2 -3HXV 5.8 SYA_ECOLI
24 PsiBlast_CBE 80.9647% -73 - C2 -3HY0 5.7 SYA_ECOLI
13 PsiBlast_PDB 80.7347% -71 - C2 -3HY1 7.7 SYA_ECOLI