@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1461: (2016-03-25 )
MDLKQYVSEVQDWPKPGVSFKDITTIMDNGEAYGYATDKIVEYAKDRDVDIVVGPEARGFIIGCPVAYSMGIGFAPVRKEGKLPREVIRYEYDLEYGTNVLTMHKDAIKPGQRVLITDDLLATGGTIEAAIKLVEKLGGIVVGIAFIIELKYLNGIEKIKDYDVMSLISYDE

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PRP_A_4(1L1R)
?
[Raw transfer]




PRP_B_10(1ZN7)
APT_HUMAN
[Raw transfer]




AMP_C_9(4M0K)
?
[Raw transfer]




AMP_D_11(4M0K)
?
[Raw transfer]




AMP_B_7(4M0K)
?
[Raw transfer]




AMP_B_5(1ZN8)
APT_HUMAN
[Raw transfer]




AMP_B_3(1ZN9)
APT_HUMAN
[Raw transfer]




CIT_A_4(1QB7)
?
[Raw transfer]




AMP_A_4(1ZN8)
APT_HUMAN
[Raw transfer]




CIT_A_4(1QB7)
?
[Raw transfer]




CIT_A_4(1QB7)
?
[Raw transfer]




CIT_C_3(1QCC)
?
[Raw transfer]




CIT_A_4(1QB8)
?
[Raw transfer]




9DA_I_9(1L1Q)
?
[Raw transfer]




ADE_B_12(1ZN7)
APT_HUMAN
[Raw transfer]




PRP_B_10(1ZN7)
APT_HUMAN
[Raw transfer]




PRP_A_6(1ZN7)
APT_HUMAN
[Raw transfer]




59 HHSearch 86.6251%-137 - C2 -2DY0 - APT_ECOLI -
1 PsiBlast_PDB 86.4751%-149 - C2 -4LZA - APT_THEP3 -
3 PsiBlast_PDB 84.2148%-140 - C2 -4MB6 - APT_YERPS -
2 PsiBlast_PDB 83.7652%-131 - C2 -2DY0 - APT_ECOLI -
21 PsiBlast_CBE 81.2748%-139 - C2 -4M0K 5.7 ?
4 PsiBlast_PDB 81.0948%-134 - C2 -4M0K - ? -
23 PsiBlast_CBE 80.6648%-134 - C2 -4M0K 5.8 ?
22 PsiBlast_CBE 80.2748%-135 - C2 -4M0K 5.2 ?
24 PsiBlast_CBE 79.2436%-141 - C2 -1ZN9 6.7 APT_HUMAN
5 PsiBlast_PDB 79.1136%-138 - C2 -1ORE - APT_HUMAN -
25 PsiBlast_CBE 78.9736%-138 - C2 -1ZN8 6.8 APT_HUMAN
7 PsiBlast_PDB 78.9136%-139 - C2 -1ZN8 - APT_HUMAN -
60 HHSearch 78.6938%-136 - C2 -1ZN8 7.4 APT_HUMAN
8 PsiBlast_PDB 78.4736%-137 - C2 -1ZN9 - APT_HUMAN -
26 PsiBlast_CBE 78.4536%-142 - C2 -1ZN7 4.5 APT_HUMAN
12 PsiBlast_PDB 78.3335%-145 - C2 -1G2P - APT1_YEAST -
6 PsiBlast_PDB 78.0736%-140 - C2 -1ZN7 2.1 APT_HUMAN
11 PsiBlast_PDB 76.2235%-146 - C2 -1G2Q - APT1_YEAST -
49 Fugue 75.5035%-145 - C2 -1G2Q - APT1_YEAST -
61 HHSearch 75.3536%-144 - C2 -1G2Q - APT1_YEAST -
50 Fugue 72.9531%-129 - C2 -1QB7 3.7 ?
14 PsiBlast_PDB 72.4231%-126 - C2 -1QB8 3.5 ?
13 PsiBlast_PDB 72.4131%-127 - C2 -1QB7 3.6 ?
15 PsiBlast_PDB 71.5831%-125 - C2 -1QCC 3.6 ?
63 HHSearch 70.5033%-127 - C2 -1QB7 3.7 ?
10 PsiBlast_PDB 68.9537%-135 - C2 -1L1R 4.6 ?
62 HHSearch 68.5836%-119 - C2 -1L1Q 3.3 ?