@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1506: (2016-03-26 )
MEQINIQFPDGNKKAFDKGTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIGIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEERKERDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRLKKHR

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

409_A_4(4HWO)
SYT_ECOLI
[Raw transfer]




409_B_6(4HWO)
SYT_ECOLI
[Raw transfer]




TSB_A_3(3UH0)
SYTM_YEAST
[Raw transfer]




SSA_A_5(1FYF)
SYT_ECOLI
[Raw transfer]




TSB_A_3(3UH0)
SYTM_YEAST
[Raw transfer]




1B2_A_4(4HWR)
SYT_ECOLI
[Raw transfer]




SSA_B_6(1FYF)
SYT_ECOLI
[Raw transfer]




X16_B_6(4HWP)
SYT_ECOLI
[Raw transfer]




X16_A_4(4HWP)
SYT_ECOLI
[Raw transfer]




1B2_B_6(4HWR)
SYT_ECOLI
[Raw transfer]




1B3_B_6(4HWS)
SYT_ECOLI
[Raw transfer]




1B3_A_4(4HWS)
SYT_ECOLI
[Raw transfer]




1B2_B_6(4HWT)
SYTC_HUMAN
[Raw transfer]




THR_B_5(1EVK)
SYT_ECOLI
[Raw transfer]




2CR_B_9(4P3O)
SYT_ECOLI
[Raw transfer]




2CR_A_4(4P3P)
SYT_ECOLI
[Raw transfer]




2CR_B_8(4P3P)
SYT_ECOLI
[Raw transfer]




2CR_A_4(4P3O)
SYT_ECOLI
[Raw transfer]




2 PsiBlast_PDB 97.0999% -87 - C2 -1NYR - SYT_STAAW -
66 HHSearch 97.0299% -87 - C2 -1NYR - SYT_STAAW -
1 PsiBlast_PDB 96.9599% -88 - C2 -1NYQ - SYT_STAAW -
21 PsiBlast_CBE 93.7799% -82 - C2 -1NYR - SYT_STAAW -
22 PsiBlast_CBE 93.4099% -82 - C2 -1NYQ - SYT_STAAW -
3 PsiBlast_PDB 82.0543% -80 - C2 -1QF6 - SYT_ECOLI -
65 HHSearch 81.2843% -78 * C2 *1QF6 - SYT_ECOLI -
11 PsiBlast_PDB 65.1441% -77 - C1 -1EVL - SYT_ECOLI -
12 PsiBlast_PDB 64.7241% -77 - C1 -1FYF 5.9 SYT_ECOLI
68 HHSearch 64.2941% -76 * C1 *1EVL - SYT_ECOLI -
40 PsiBlast_CBE 64.0341% -77 - C1 -1EVK 3.2 SYT_ECOLI
39 PsiBlast_CBE 63.8741% -74 - C1 -1EVL - SYT_ECOLI -
6 PsiBlast_PDB 63.8241% -77 - C1 -4HWR 5.2 SYT_ECOLI
28 PsiBlast_CBE 63.6441% -74 - C1 -4HWO 6.6 SYT_ECOLI
38 PsiBlast_CBE 63.5641% -74 - C1 -1EVL - SYT_ECOLI -
37 PsiBlast_CBE 63.5441% -74 - C1 -1EVL - SYT_ECOLI -
36 PsiBlast_CBE 63.5241% -75 - C1 -1FYF 6.4 SYT_ECOLI
26 PsiBlast_CBE 63.5141% -75 - C1 -4HWR 5.2 SYT_ECOLI
7 PsiBlast_PDB 63.5141% -76 - C1 -4HWS 4.7 SYT_ECOLI
5 PsiBlast_PDB 63.4841% -74 - C1 -4HWP 4.6 SYT_ECOLI
27 PsiBlast_CBE 63.3841% -74 - C1 -4HWP 5.9 SYT_ECOLI
4 PsiBlast_PDB 63.2641% -75 - C1 -4HWO 6.6 SYT_ECOLI
8 PsiBlast_PDB 63.1241% -73 - C1 -4P3O 8.5 SYT_ECOLI
25 PsiBlast_CBE 63.0941% -74 - C1 -4HWS 5.3 SYT_ECOLI
24 PsiBlast_CBE 62.9241% -71 - C1 -4P3O 8.5 SYT_ECOLI
23 PsiBlast_CBE 62.8341% -72 - C1 -4P3P 8.8 SYT_ECOLI
9 PsiBlast_PDB 62.4541% -71 - C1 -4P3P 9.0 SYT_ECOLI
41 PsiBlast_CBE 61.9140% -80 - C1 -4HWT 5.3 SYTC_HUMAN
69 HHSearch 60.2137% -73 - C1 -3UH0 6.5 SYTM_YEAST
18 PsiBlast_PDB 58.8037% -76 - C1 -3UH0 6.5 SYTM_YEAST