@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1510: (2016-03-26 )
MSTNIAINGMGRIGRMVLRIALQNKNLNVVAINASYPPETIAHLINYDTTHGKYNLKVEPIENGLQVGDHKIKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLTGPSKGGHVQMVVKGVNDNQLDIEAFDIFSNASCTTNCIGPVAKVLNNQFGIVNGLMTTVHAITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAGLEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAEQIGALLTSKETVSAS

Atome Classification :

(45 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_3(4BOY)
?
[Raw transfer]



NAD_B_4(4BOY)
?
[Raw transfer]



NAD_A_3(3ZCX)
?
[Raw transfer]



NAD_B_4(3ZCX)
?
[Raw transfer]



NAD_C_3(1DC6)
G3P1_ECOLI
[Raw transfer]



NAD_B_6(3ZDF)
?
[Raw transfer]



NDP_O_12(1RM4)
G3PA_SPIOL
[Raw transfer]



NAD_A_5(3ZDF)
?
[Raw transfer]



NAD_B_4(3L0D)
?
[Raw transfer]



NAD_D_4(1DC6)
G3P1_ECOLI
[Raw transfer]



NAD_O_3(1GAD)
G3P1_ECOLI
[Raw transfer]



NAD_A_3(3CPS)
?
[Raw transfer]



NAD_P_4(1GAD)
G3P1_ECOLI
[Raw transfer]



NAD_A_3(3L0D)
?
[Raw transfer]



NAD_A_3(3PYM)
G3P3_YEAST
[Raw transfer]



NAD_A_3(2EP7)
G3P_AQUAE
[Raw transfer]



NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]



NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]



NAD_O_3(3H9E)
G3PT_HUMAN
[Raw transfer]



NAD_P_7(1GAE)
G3P1_ECOLI
[Raw transfer]



NAD_Q_15(1HDG)
G3P_THEMA
[Raw transfer]



NAD_O_5(1GAE)
G3P1_ECOLI
[Raw transfer]



MES_Y_25(1S7C)
G3P1_ECOLI
[Raw transfer]



BME_E_5(2I5P)
G3P1_KLULA
[Raw transfer]



BME_F_6(2I5P)
G3P1_KLUMA
[Raw transfer]



CHAIN_I_7(3B1K)
?
[Raw transfer]
-
CHAIN_D_4(3ZDF)
?
[Raw transfer]
-
CHAIN_D_4(3B1K)
?
[Raw transfer]
-
CHAIN_J_8(3B1K)
?
[Raw transfer]
-
CHAIN_D_4(3B1J)
?
[Raw transfer]
-
CHAIN_C_3(3ZDF)
?
[Raw transfer]
-
CHAIN_C_3(3B1J)
?
[Raw transfer]
-
CHAIN_C_3(3B1K)
?
[Raw transfer]
-
22 PsiBlast_CBE 93.2564%-100 - C1 -4DIB - ? -
1 PsiBlast_PDB 92.8864%-102 - C1 -4DIB - ? -
24 PsiBlast_CBE 92.2564%-105 - C1 -4DIB - ? -
23 PsiBlast_CBE 91.8664%-104 - C1 -4DIB - ? -
21 PsiBlast_CBE 91.5864%-103 - C1 -4DIB - ? -
88 PsiBlast_CBE 90.9051% -90 - C1 -3ZDF 9.3 ?
87 PsiBlast_CBE 90.4851% -90 - C1 -4BOY 8.9 ?
86 PsiBlast_CBE 90.2851% -91 - C1 -4BOY 8.5 ?
89 PsiBlast_CBE 90.2751% -92 - C1 -3ZDF 9.2 ?
66 PsiBlast_CBE 89.9354% -89 - C1 -3B1J 5.3 ?
60 PsiBlast_CBE 89.6754% -90 - C1 -3B20 - ? -
58 PsiBlast_CBE 89.4154% -88 - C1 -3B20 - ? -
82 PsiBlast_CBE 89.2448% -85 - C1 -3DOC - ? -
15 PsiBlast_PDB 89.2454% -88 - C1 -3B20 - ? -
62 PsiBlast_CBE 89.1954% -87 - C1 -3B20 - ? -
109 HHSearch 89.1851% -90 - C1 -3HJA - G3P_BORBU -
13 PsiBlast_PDB 89.1754% -89 - C1 -3B1J 5.0 ?
50 PsiBlast_CBE 89.0653% -91 - C1 -1NPT - G3P_GEOSE -
42 PsiBlast_CBE 89.0453% -92 - C1 -4DBV - G3P_GEOSE -
4 PsiBlast_PDB 89.0053% -89 - C1 -3CMC - G3P_GEOSE -
90 PsiBlast_CBE 88.9151% -88 - C1 -3ZCX 9.0 ?
91 PsiBlast_CBE 88.2151% -88 - C1 -3ZCX 9.0 ?
99 PsiBlast_CBE 87.2648% -91 - C1 -1DC6 8.4 G3P1_ECOLI
65 PsiBlast_CBE 87.1954% -94 - C1 -3B1K 4.3 ?
108 HHSearch 86.8252% -82 - C1 -1HDG 9.1 G3P_THEMA
105 HHSearch 86.6851% -86 - C1 -1RM4 7.6 G3PA_SPIOL
77 PsiBlast_CBE 86.6852% -84 - C1 -1HDG 9.3 G3P_THEMA
98 PsiBlast_CBE 86.4448% -92 - C1 -1GAD 8.3 G3P1_ECOLI
112 HHSearch 86.2049% -86 - C1 -3PYM 8.9 G3P3_YEAST
14 PsiBlast_PDB 85.9954% -86 - C1 -3B1K 4.5 ?
18 PsiBlast_PDB 85.8452% -82 - C1 -1HDG 9.1 G3P_THEMA
20 PsiBlast_PDB 85.3949% -88 - C1 -3L0D 8.0 ?
81 PsiBlast_CBE 85.3549% -88 - C1 -3L0D 8.9 ?
102 PsiBlast_CBE 85.3147% -91 - C1 -1GAE 6.7 G3P1_ECOLI
96 PsiBlast_CBE 85.2547% -87 - C1 -1S7C 2.3 G3P1_ECOLI
63 PsiBlast_CBE 84.9054% -87 - C1 -3B1K 4.0 ?
100 PsiBlast_CBE 84.7248% -88 - C1 -1DC6 8.4 G3P1_ECOLI
101 PsiBlast_CBE 84.6647% -89 - C1 -1GAE 6.8 G3P1_ECOLI
117 HHSearch 84.4443% -86 - C1 -3H9E 8.8 G3PT_HUMAN
110 HHSearch 84.2044% -91 - C1 -3CPS 8.8 ?
93 PsiBlast_CBE 84.0349% -94 - C1 -2I5P 2.6 G3P1_KLULA (first)
97 PsiBlast_CBE 83.8248% -92 - C1 -1GAD 8.6 G3P1_ECOLI
64 PsiBlast_CBE 83.6654% -87 - C1 -3B1K 2.4 ?
92 PsiBlast_CBE 83.6049% -94 - C1 -2I5P 2.8 G3P1_KLUMA
113 HHSearch 82.8745% -81 - C1 -2EP7 8.7 G3P_AQUAE