@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1515: (2016-03-26 )
MMKFHHRLMLLISSILIISFVTLGIIIHASITYVLSEKHEQALATDARSYIYLVQDNEIDKVKEIVKQQNIDLLITKHDKKVFSSGKLKAIPNSDSYIQKRDVFIFNKKVNGYHVWIKGYNNDITEMHWTLWKYLILTCLVVLICLYFASRSFKRTLIRPIQEVTYATQLLANGYYHIRVPESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNISHNIEQVGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQVHAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLVTDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESKIAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILKDYKE

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(4BIW)
CPXA_ECOLI
[Raw transfer]




ATP_A_3(4CB0)
CPXA_ECOLI
[Raw transfer]




AN2_B_4(4U7O)
?
[Raw transfer]




AN2_A_3(4U7O)
?
[Raw transfer]




ADP_A_3(4JAS)
?
[Raw transfer]




ADP_A_7(3DGE)
?
[Raw transfer]




ATP_A_3(4BIV)
CPXA_ECOLI
[Raw transfer]




ATP_A_4(3SL2)

[Raw transfer]




ADP_A_8(4JAV)
?
[Raw transfer]




ATP_A_4(3SL2)

[Raw transfer]




ADP_B_13(4JAV)
?
[Raw transfer]




ADP_B_8(3DGE)
?
[Raw transfer]




ADP_A_2(2C2A)
?
[Raw transfer]




ADP_A_2(2C2A)
?
[Raw transfer]




ADP_A_2(4JAU)
?
[Raw transfer]




1 PsiBlast_PDB 79.9931% -66 - C2 -4I5S - ? -
22 PsiBlast_CBE 79.7240% -72 - C2 -4JAV 7.4 ?
3 PsiBlast_PDB 79.0037% -69 - C2 -4U7O 9.1 ?
6 PsiBlast_PDB 77.6840% -68 - C2 -4JAV 8.6 ?
4 PsiBlast_PDB 75.9640% -75 - C2 -2C2A 7.4 ?
29 HHSearch 75.8739% -75 - C2 -2C2A 7.4 ?
8 PsiBlast_PDB 75.2440% -79 - C2 -4JAU 6.4 ?
49 Fugue 75.2132% -58 - C2 -4I5S - ? -
7 PsiBlast_PDB 75.1640% -72 - C2 -4JAS 8.6 ?
27 HHSearch 74.8827% -81 - C2 -3A0R - ? -
5 PsiBlast_PDB 74.7940% -65 - C2 -3DGE 7.0 ?
23 PsiBlast_CBE 74.4840% -62 - C2 -3DGE 7.7 ?
2 PsiBlast_PDB 74.2237% -69 - C2 -4U7N - ? -
21 PsiBlast_CBE 71.5037% -53 - C2 -4U7O 9.2 ?
14 PsiBlast_PDB 70.7428% -91 - C2 -3A0R - ? -
9 PsiBlast_PDB 65.1129% -63 - C2 -4Q20 - DIVL_CAUCR -
19 PsiBlast_PDB 64.1427% -60 - C2 -3D36 - ? -
30 HHSearch 57.9018% -62 * C2 *2Q8G - PDK1_HUMAN -
16 PsiBlast_PDB 57.1327% -45 - C2 -4BIV 6.1 CPXA_ECOLI
36 HHSearch 56.9425% -65 - C2 -1ID0 - -
37 HHSearch 56.3136% -62 - C2 -3SL2 7.6
15 PsiBlast_PDB 47.0641% -55 - C2 -3SL2 7.6