@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1531: (2016-03-26 )
MKIGIPREIKNNENRVGLSPSGVHALVESGHTVLVETNAGSGSFFEDVDYKEAGAEIVAEQAKVWDVDMVIKVKEPLESEYPYFKEGLVLFTYLHLANEEKLTQALIDRKVISIAYETVQLPDRSSPLLSPMSEVAGRMSAQVGAEFLQKLNGGMGILLGGVPGVPKGKVTIIGGGQAGTNAAKIALGLGADVTILDVNPKRLQQLDDLFGGRVHTIMSNPLNIELYVKQSDLVIGAVLIPGAKAPRLVTEDMIKQMKNGSVIIDIAIDQGGIFETTDKITTHDDPTYIKHGVVHYAVANMPGAVPRTSTLALNNATLPYALMLANKGYREAFKSNQPLSLGLNTYKGHVTNKGVAEAFEMEYKSVEEALQL

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAI_B_4(2VHZ)
DHA_MYCTU
[Raw transfer]



NAI_A_3(2VHZ)
DHA_MYCTU
[Raw transfer]



NAD_E_8(2VOJ)
DHA_MYCTU
[Raw transfer]



NAI_B_4(2VHV)
DHA_MYCTU
[Raw transfer]



NAD_C_6(2VOJ)
DHA_MYCTU
[Raw transfer]



NAI_A_3(2VHV)
DHA_MYCTU
[Raw transfer]



NAD_A_4(2VOJ)
DHA_MYCTU
[Raw transfer]



NAD_G_7(1PJC)
?
[Raw transfer]



NAD_G_7(1PJC)
?
[Raw transfer]



NAD_G_7(1PJC)
?
[Raw transfer]



NAD_G_7(1PJC)
?
[Raw transfer]



NAD_G_7(1PJC)
?
[Raw transfer]



6MD_A_2(4LMP)
?
[Raw transfer]



GOL_B_6(1PTJ)
PNTAA_RHORT
[Raw transfer]



NAD_B_5(1NM5)
PNTAA_RHORT
[Raw transfer]



2OP_C_7(2VOJ)
DHA_MYCTU
[Raw transfer]



PYR_A_7(1SAY)
?
[Raw transfer]



2OP_E_9(2VOJ)
DHA_MYCTU
[Raw transfer]
6 PsiBlast_PDB 92.3853% -98 - C3 -2VHX - DHA_MYCTU -
30 PsiBlast_CBE 92.2753% -96 - C3 -2VHW - DHA_MYCTU -
102 HHSearch 92.1354%-102 - C3 -1PJC 9.8 ?
29 PsiBlast_CBE 91.9453% -98 - C3 -2VHW - DHA_MYCTU -
11 PsiBlast_PDB 91.9054%-102 - C3 -1PJC 9.8 ?
28 PsiBlast_CBE 91.4253% -96 - C3 -2VHW - DHA_MYCTU -
5 PsiBlast_PDB 91.3753% -95 - C3 -2VHW - DHA_MYCTU -
4 PsiBlast_PDB 91.3153% -94 - C3 -4LMP 5.2 ?
10 PsiBlast_PDB 90.9054% -96 - C3 -1SAY 3.6 ?
9 PsiBlast_PDB 90.8854% -97 - C3 -1PJB - ? -
1 PsiBlast_PDB 90.6461% -97 - C3 -2EEZ - ? -
31 PsiBlast_CBE 90.3852% -94 - C3 -2VHV 10.5 DHA_MYCTU
2 PsiBlast_PDB 90.2353% -92 - C3 -2VOE - DHA_MYCTU -
23 PsiBlast_CBE 90.1553% -91 - C3 -2VHZ 11.3 DHA_MYCTU
122 Fugue 90.1153%-102 - C3 -1PJC 9.3 ?
22 PsiBlast_CBE 90.0053% -89 - C3 -2VOJ 11.0 DHA_MYCTU
26 PsiBlast_CBE 89.9253% -90 - C3 -2VHW - DHA_MYCTU -
7 PsiBlast_PDB 89.9053% -92 - C3 -2VHZ 11.4 DHA_MYCTU
8 PsiBlast_PDB 89.8752% -91 - C3 -2VHV 10.9 DHA_MYCTU
27 PsiBlast_CBE 89.8553% -90 - C3 -2VHW - DHA_MYCTU -
21 PsiBlast_CBE 89.7453% -90 - C3 -2VOJ 10.6 DHA_MYCTU
3 PsiBlast_PDB 89.3053% -91 - C3 -2VOJ 5.9 DHA_MYCTU
126 Fugue 66.8057%-121 * C3 *1PJC 9.2 ?
124 Fugue 66.8057%-121 - C3 -1PJC 9.2 ?
35 PsiBlast_CBE 62.5432% -77 - C3 -1NM5 4.8 PNTAA_RHORT
56 PsiBlast_CBE 61.7432% -77 - C3 -1PTJ 3.0 PNTAA_RHORT