@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1545: (2016-03-26 )
MKQFNVLVADPISKDGIKALLDHEQFNVDIQTGLSEEALIKIIPSYHALIVRSQTTVTENIINAADSLKVIARAGVGVDNININAATLKGILVINAPDGNTISATEHSLAMLLSMARNIPQAHQSLTNKEWNRNAFKGTELYHKTLGVIGAGRIGLGVAKRAQSFGMKILAFDPYLTDEKAKSLSITKATVDEIAQHSDFVTLHTPLTPKTKGLINADFFAKAKPSLQIINVARGGIIDEKALIKALDEGQISRAAIDVFEHEPATDSPLVAHDKIIVTPHLGASTVEAQEKVAISVSNEIIEILIDGTVTHAVNAPKMDLSNIDDTVKSFINLSQTVGELAIQLMYNAPSSIKITYGGDLASIDSSLLTRTIITHILKDDLGPEVNIINALMLLNQQQVTLNIENNKAETGFSNYLEVELSNDSDSVKVGASVFTGFGPRIVRINNFSVDLKPNQYQIVSYHNDTPGMVGKTGALLGKYNINIASMTLGRTEAGGDALMILSVDQPVSNNIIDELKQVGEYNQIFTTELTVQS

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_5(2G76)
SERA_HUMAN
[Raw transfer]



NAD_A_5(2G76)
SERA_HUMAN
[Raw transfer]



NAI_F_6(2P9G)
SERA_ECOLI
[Raw transfer]



NAD_A_5(1PSD)
SERA_ECOLI
[Raw transfer]



NAD_B_6(2G76)
SERA_HUMAN
[Raw transfer]



NAI_G_7(2P9C)
SERA_ECOLI
[Raw transfer]



NAI_A_3(2PA3)
SERA_ECOLI
[Raw transfer]



NAI_E_5(2P9C)
SERA_ECOLI
[Raw transfer]



NAD_D_4(1WWK)
?
[Raw transfer]



NAD_C_3(1WWK)
?
[Raw transfer]



NAD_C_3(1WWK)
?
[Raw transfer]



NAD_B_9(1PSD)
SERA_ECOLI
[Raw transfer]



NAI_E_5(2P9G)
SERA_ECOLI
[Raw transfer]



FMT_A_4(1HKU)
CTBP1_RAT
[Raw transfer]



GOL_A_8(3JTM)
FDH_ARATH
[Raw transfer]



FMT_A_2(3GA0)
CTBP1_RAT
[Raw transfer]



GOL_A_14(3JTM)
FDH_ARATH
[Raw transfer]



HPV_B_6(3DDN)
SERA_MYCTU
[Raw transfer]



NHE_E_5(2CUK)
?
[Raw transfer]



ACY_C_3(1MX3)
CTBP1_HUMAN
[Raw transfer]
81 Fugue 96.8835%-103 - C2 -1YGY - SERA_MYCTU -
91 HHSearch 96.2335%-107 - C2 -1YGY - SERA_MYCTU -
3 PsiBlast_PDB 95.6736%-112 - C2 -3DDN - SERA_MYCTU -
2 PsiBlast_PDB 95.6436%-113 - C2 -3DC2 - SERA_MYCTU -
1 PsiBlast_PDB 95.4936%-113 - C2 -1YGY - SERA_MYCTU -
22 PsiBlast_CBE 94.0536%-106 - C2 -1YGY - SERA_MYCTU -
21 PsiBlast_CBE 92.7036%-107 - C2 -3DC2 - SERA_MYCTU -
23 PsiBlast_CBE 92.5336%-105 - C2 -3DDN 2.5 SERA_MYCTU
95 HHSearch 79.9545%-112 * C2 *2G76 10.1 SERA_HUMAN
4 PsiBlast_PDB 78.2145%-110 - C2 -2G76 10.1 SERA_HUMAN
24 PsiBlast_CBE 78.1245%-109 - C2 -2G76 10.0 SERA_HUMAN
100 HHSearch 77.5542%-114 - C2 -1WWK 8.9 ?
5 PsiBlast_PDB 77.4042%-113 - C2 -1WWK 8.9 ?
25 PsiBlast_CBE 75.9242%-113 - C2 -1WWK 9.4 ?
106 HHSearch 74.9431% -97 - C2 -3K5P - ? -
92 HHSearch 72.4829%-100 - C2 -1SC6 - SERA_ECOLI -
97 HHSearch 72.3834%-105 - C2 -2DBQ - GYAR_PYRHO -
101 HHSearch 72.1128%-108 - C2 -2GCG - GRHPR_HUMAN -
8 PsiBlast_PDB 71.5634% -97 - C2 -1PSD 9.4 SERA_ECOLI
17 PsiBlast_PDB 71.2634%-106 - C2 -2DBQ - GYAR_PYRHO -
12 PsiBlast_PDB 70.8334%-102 - C2 -2P9G 9.0 SERA_ECOLI
9 PsiBlast_PDB 70.8034%-103 - C2 -2P9C 8.3 SERA_ECOLI
30 PsiBlast_CBE 70.7234%-100 - C2 -2P9C 9.9 SERA_ECOLI
11 PsiBlast_PDB 70.6834% -99 - C2 -2PA3 9.3 SERA_ECOLI
26 PsiBlast_CBE 70.6334% -98 - C2 -1PSD 9.2 SERA_ECOLI
31 PsiBlast_CBE 70.5134% -96 - C2 -2P9G 9.5 SERA_ECOLI
18 PsiBlast_PDB 65.1534% -90 - C2 -1MX3 4.2 CTBP1_HUMAN
42 PsiBlast_CBE 62.8333% -89 - C2 -3GA0 3.3 CTBP1_RAT
41 PsiBlast_CBE 62.2633% -84 - C2 -1HKU 3.7 CTBP1_RAT
72 PsiBlast_CBE 62.0931% -98 - C2 -2CUK 3.4 ?