@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1549: (2016-03-26 )
MSDFNHTDHSTTNHSQTPRYRRPKFPWFKTVIVALIAGIIGALLVLGIGKVLNSTILNKDGSTVQTTNNKGGNQLDGQSKKFGTVHEMIKSVSPTIVGVINMQKASSVDDLLKGKSSKPSEAGVGSGVIYQINNNSAYIVTNNHVIDGANEIRVQLHNKKQVKAKLVGKDAVTDIAVLKIENTKGIKAIQFANSSKVQTGDSVFAMGNPLGLQFANSVTSGIISASERTIDAETTGGNTKVSVLQTDAAINPGNSGGALVDINGNLVGINSMKIAATQVEGIGFAIPSNEVKVTIEQLVKHGKIDRPSIGIGLINLKDIPEEEREQLHTDREDGIYVAKADSDIDLKKGDIITEIDGKKIKDDVDLRSYLYENKKPGESVTVTVIRDGKTKEVKVKLKQQKEQPKRQSRSERQSPGQGDRDFFR

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_Z_25(3STJ)
DEGQ_ECOLI
[Raw transfer]
-
CHAIN_D_4(3QO6)
DEGP1_ARATH
[Raw transfer]
-
BOG_B_9(3TJO)
HTRA1_HUMAN
[Raw transfer]



DFP_A_2(3MH6)
DEGP_ECOLI
[Raw transfer]



CHAIN_H_8(3PV3)
?
[Raw transfer]
-
CHAIN_B_2(3OU0)
DEGP_ECOLI
[Raw transfer]
-
CHAIN_D_4(2Z9I)
?
[Raw transfer]
-
CHAIN_F_6(3PV3)
?
[Raw transfer]
-
CHAIN_F_6(3QO6)
DEGP1_ARATH
[Raw transfer]
-
CHAIN_G_7(3PV3)
?
[Raw transfer]
-
CHAIN_B_2(3MH7)
DEGP_ECOLI
[Raw transfer]
-
CHAIN_E_5(2Z9I)
?
[Raw transfer]
-
CHAIN_Z_25(3STJ)
DEGQ_ECOLI
[Raw transfer]
-
CHAIN_Z_25(3STJ)
DEGQ_ECOLI
[Raw transfer]
-
CHAIN_E_5(3PV3)
?
[Raw transfer]
-
CHAIN_D_4(3QO6)
DEGP1_ARATH
[Raw transfer]
-
CHAIN_D_4(3QO6)
DEGP1_ARATH
[Raw transfer]
-
61 Fugue 87.9437% -50 - C4 -3PV2 - ? -
12 PsiBlast_PDB 85.4335% -67 - C4 -4YNN - ? -
30 PsiBlast_CBE 85.3136% -65 - C4 -3STJ Error DEGQ_ECOLI
29 PsiBlast_CBE 85.2636% -64 - C4 -3STJ - DEGQ_ECOLI -
69 HHSearch 85.1138% -64 - C4 -3STJ 4.9 DEGQ_ECOLI
31 PsiBlast_CBE 84.5536% -64 - C4 -3STJ - DEGQ_ECOLI -
21 PsiBlast_CBE 84.5036% -63 - C4 -3STJ - DEGQ_ECOLI -
24 PsiBlast_CBE 84.1836% -62 - C4 -3STJ - DEGQ_ECOLI -
22 PsiBlast_CBE 83.9936% -64 - C4 -3STJ - DEGQ_ECOLI -
27 PsiBlast_CBE 83.9136% -62 - C4 -3STJ - DEGQ_ECOLI -
23 PsiBlast_CBE 83.9136% -64 - C4 -3STJ - DEGQ_ECOLI -
28 PsiBlast_CBE 83.7236% -63 - C4 -3STJ - DEGQ_ECOLI -
25 PsiBlast_CBE 83.4236% -63 - C4 -3STJ - DEGQ_ECOLI -
26 PsiBlast_CBE 83.4036% -63 - C4 -3STJ - DEGQ_ECOLI -
8 PsiBlast_PDB 83.1336% -62 - C4 -3STJ 4.7 DEGQ_ECOLI
72 HHSearch 81.8936% -74 - C4 -3PV2 - ? -
33 PsiBlast_CBE 81.3834% -57 - C4 -3QO6 Error DEGP1_ARATH
32 PsiBlast_CBE 81.2734% -57 - C4 -3QO6 3.5 DEGP1_ARATH
68 Fugue 80.9526% -34 - C4 -4FLN - DEGP2_ARATH -
75 HHSearch 80.7135% -60 - C4 -3QO6 3.2 DEGP1_ARATH
7 PsiBlast_PDB 80.0040% -62 - C4 -3OU0 3.9 DEGP_ECOLI
11 PsiBlast_PDB 79.4534% -53 - C4 -3QO6 3.2 DEGP1_ARATH
5 PsiBlast_PDB 78.9540% -63 - C4 -3MH7 4.5 DEGP_ECOLI
1 PsiBlast_PDB 77.3740% -56 - C4 -3MH6 3.6 DEGP_ECOLI
14 PsiBlast_PDB 76.7640% -70 - C4 -3PV3 4.7 ?
36 PsiBlast_CBE 75.9740% -69 - C4 -3PV3 5.0 ?
35 PsiBlast_CBE 75.5540% -66 - C4 -3PV3 3.4 ?
34 PsiBlast_CBE 75.4540% -75 - C4 -3PV3 5.5 ?
43 PsiBlast_CBE 69.0032% -51 - C4 -2Z9I 3.6 ?
42 PsiBlast_CBE 67.8632% -50 - C4 -2Z9I 3.2 ?
48 PsiBlast_CBE 64.3932% -70 - C4 -3TJO 4.5 HTRA1_HUMAN