@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1550: (2016-03-26 )
MTNVLIEDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAIDFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWLDAEKTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEEVTKFIHGEDALNDAIRISQALFSGDLKSLSAKELKDGFKDVPQVTLSNDTTNIVEVLIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKIDGEFTIIRRGKKKYFMVNYQ

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

YSA_H_8(1VBM)
SYY_ECOLI
[Raw transfer]




YSA_D_4(1VBN)
SYY_ECOLI
[Raw transfer]




YSA_C_3(1VBN)
SYY_ECOLI
[Raw transfer]




YSA_B_4(2PID)
SYYM_HUMAN
[Raw transfer]




YSA_A_3(2PID)
SYYM_HUMAN
[Raw transfer]




YSA_A_3(2PID)
SYYM_HUMAN
[Raw transfer]




YSA_G_7(1VBM)
SYY_ECOLI
[Raw transfer]




AZY_A_2(2YXN)
SYY_ECOLI
[Raw transfer]




TYA_C_3(3TS1)
SYY_GEOSE
[Raw transfer]




AZY_A_2(2YXN)
SYY_ECOLI
[Raw transfer]




TYR_S_3(1TYD)
SYY_GEOSE
[Raw transfer]




TYR_S_3(1TYA)
SYY_GEOSE
[Raw transfer]




TYR_E_5(1X8X)
SYY_ECOLI
[Raw transfer]




TYR_S_3(1TYB)
SYY_GEOSE
[Raw transfer]




TYR_C_3(1WQ4)
SYY_ECOLI
[Raw transfer]




TYR_C_3(4TS1)
SYY_GEOSE
[Raw transfer]




TYR_C_3(1Y42)
SYYM_NEUCR
[Raw transfer]




TYR_D_4(4TS1)
SYY_GEOSE
[Raw transfer]




TYR_C_3(1Y42)
SYYM_NEUCR
[Raw transfer]




IYR_C_3(1WQ3)
SYY_ECOLI
[Raw transfer]




383_C_3(1JII)
SYY_STAAE
[Raw transfer]




629_C_3(1JIJ)
SYY_STAAE
[Raw transfer]




545_C_3(1JIK)
SYY_STAAE
[Raw transfer]




485_C_3(1JIL)
SYY_STAAE
[Raw transfer]




TYB_A_8(1H3F)
SYY_THET2
[Raw transfer]




TYR_X_2(4OJM)
SYYM_NEUCR
[Raw transfer]




4 PsiBlast_PDB 94.65100% -87 - C3 -1JIL 6.2 SYY_STAAE
2 PsiBlast_PDB 92.68100% -87 - C3 -1JIJ 3.6 SYY_STAAE
3 PsiBlast_PDB 92.32100% -81 - C3 -1JIK 5.8 SYY_STAAE
1 PsiBlast_PDB 91.29100% -83 - C3 -1JII 3.7 SYY_STAAE
141 HHSearch 86.9943% -91 - C3 -2JAN - SYY_MYCTU -
13 PsiBlast_PDB 85.9343% -90 * C3 *2JAN - SYY_MYCTU -
8 PsiBlast_PDB 81.3662% -81 - C3 -1TYA 3.1 SYY_GEOSE
9 PsiBlast_PDB 81.3062% -80 - C3 -1TYD 3.3 SYY_GEOSE
7 PsiBlast_PDB 80.9962% -78 - C3 -1TYC - SYY_GEOSE -
6 PsiBlast_PDB 80.9761% -82 - C3 -3TS1 6.3 SYY_GEOSE
140 HHSearch 80.8961% -78 - C3 -2TS1 - SYY_GEOSE -
11 PsiBlast_PDB 80.8061% -78 - C3 -4TS1 2.7 SYY_GEOSE
10 PsiBlast_PDB 80.5862% -77 - C3 -1TYB 2.8 SYY_GEOSE
5 PsiBlast_PDB 80.5461% -78 - C3 -2TS1 - SYY_GEOSE -
21 PsiBlast_CBE 80.4461% -83 - C3 -4TS1 2.8 SYY_GEOSE
16 PsiBlast_PDB 78.4651% -84 - C3 -2YXN 2.7 SYY_ECOLI
12 PsiBlast_PDB 77.9252% -81 - C3 -1X8X 3.2 SYY_ECOLI
15 PsiBlast_PDB 77.8651% -83 - C3 -1WQ3 3.4 SYY_ECOLI
22 PsiBlast_CBE 77.8252% -83 - C3 -1VBM 7.4 SYY_ECOLI
18 PsiBlast_PDB 77.6451% -84 - C3 -1VBN 7.0 SYY_ECOLI
23 PsiBlast_CBE 77.5551% -83 - C3 -1VBN 6.5 SYY_ECOLI
17 PsiBlast_PDB 77.5351% -83 - C3 -1WQ4 2.9 SYY_ECOLI
14 PsiBlast_PDB 77.2152% -83 - C3 -1VBM 6.9 SYY_ECOLI
145 HHSearch 76.1348% -83 - C3 -2YXN 2.7 SYY_ECOLI
144 HHSearch 73.3942% -86 - C3 -2PID 7.7 SYYM_HUMAN
25 PsiBlast_CBE 71.7143% -89 - C3 -2PID 7.6 SYYM_HUMAN
143 HHSearch 71.2333% -76 - C3 -1Y42 3.2 SYYM_NEUCR
27 PsiBlast_CBE 70.5432% -81 - C3 -1Y42 3.2 SYYM_NEUCR
26 PsiBlast_CBE 70.2732% -79 - C3 -4OJM 3.4 SYYM_NEUCR
19 PsiBlast_PDB 70.1743% -86 - C3 -2PID 7.7 SYYM_HUMAN