@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1627: (2016-03-27 )
MNKNIIIKSIAALTILTSVTGVGTTMVEGIQQTAKAENTVKQITNTNVAPYSGVTWMGAGTGFVVGNHTIITNKHVTYHMKVGDEIKAHPNGFYNNGGGLYKVTKIVDYPGKEDIAVVQVEEKSTQPKGRKFKDFTSKFNIASEAKENEPISVIGYPNPNGNKLQMYESTGKVLSVNGNIVSSDAIIQPGSSGSPILNSKHEAIGVIYAGNKPSGESTRGFAVYFSPEIKKFIADNLDK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

VPF_B_5(3UFA)
SPLA_STAA8
[Raw transfer]



VPF_A_3(3UFA)
SPLA_STAA8
[Raw transfer]



I1S_B_6(4MVN)
SPLA_STAA8
[Raw transfer]



I1S_D_8(4MVN)
SPLA_STAA8
[Raw transfer]
1 PsiBlast_PDB 97.6594% -81 - C1 -4INK - SPLD_STAA8 -
5 PsiBlast_PDB 81.1848% -70 - C1 -2AS9 - SPLC_STAA8 (first) -
4 PsiBlast_PDB 81.0349% -76 - C1 -2VID - SPLB_STAA8 -
21 PsiBlast_CBE 80.5649% -74 - C1 -4K1T - SPLB_STAA8 -
46 HHSearch 80.0648% -71 - C1 -2AS9 - SPLC_STAA8 (first) -
22 PsiBlast_CBE 79.8549% -77 - C1 -4K1T - SPLB_STAA8 -
3 PsiBlast_PDB 79.4849% -76 - C1 -4K1T - SPLB_STAA8 -
2 PsiBlast_PDB 78.9894% -40 - C- -4INL - SPLD_STAA8 -
6 PsiBlast_PDB 78.2145% -71 - C1 -2W7S - SPLA_STAA8 -
26 PsiBlast_CBE 77.2545% -63 - C1 -3UFA 3.7 SPLA_STAA8
8 PsiBlast_PDB 76.6945% -63 - C1 -3UFA 3.7 SPLA_STAA8
23 PsiBlast_CBE 76.6345% -63 - C1 -4MVN 4.5 SPLA_STAA8
7 PsiBlast_PDB 75.5245% -65 - C1 -2W7U - SPLA_STAA8 -
25 PsiBlast_CBE 75.3645% -59 - C1 -4MVN 4.5 SPLA_STAA8
9 PsiBlast_PDB 70.4145% -47 - C- -4MVN - SPLA_STAA8 -
10 PsiBlast_PDB 69.9531% -63 - C1 -4JCN - GSEA_STAES -
48 HHSearch 67.2729% -64 - C1 -2O8L - SSPA_STAAM -
11 PsiBlast_PDB 65.5031% -57 - C1 -1QY6 - SSPA_STAAM -
47 HHSearch 65.1429% -64 * C1 *1WCZ - SSPA_STAAU -
24 PsiBlast_CBE 64.9845% -53 - C- -4MVN - SPLA_STAA8 -