@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1721: (2016-03-28 )
MNALLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNLKNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSERKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQRNGKKYQDMAILYRTNAQSRVLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMFDALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENTLESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPESLLENHSSGKRQTIQPKAKPFAKRGFSQRTTSTKKQVSSSDWNVGDKVMHKAWGEGMVSNVNEKNGSIELDIIFKSQGPKRLLAQFAPIEKKED

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_K_5(4C30)
?
[Raw transfer]
-
NACID_C_1(1UAA)
REP_ECOLI
[Raw transfer]
-
NACID_D_2(2PJR)
?
[Raw transfer]
-
NACID_C_1(2PJR)
?
[Raw transfer]
-
NACID_D_2(2PJR)
?
[Raw transfer]
-
NACID_C_1(2PJR)
?
[Raw transfer]
-
NACID_E_3(2IS1)
UVRD_ECOLI
[Raw transfer]
-
NACID_C_1(1UAA)
REP_ECOLI
[Raw transfer]
-
NACID_C_1(1UAA)
REP_ECOLI
[Raw transfer]
-
NACID_C_1(2IS1)
UVRD_ECOLI
[Raw transfer]
-
CHAIN_X_7(4C30)
?
[Raw transfer]
-
CHAIN_M_5(4C2T)
?
[Raw transfer]
-
CHAIN_L_6(4C30)
?
[Raw transfer]
-
NACID_Y_1(3PJR)
?
[Raw transfer]
-
CHAIN_Y_8(4C30)
?
[Raw transfer]
-
CHAIN_X_3(4C2U)
?
[Raw transfer]
-
CHAIN_Y_4(4C2U)
?
[Raw transfer]
-
1 PsiBlast_PDB 97.8259% -84 - C4 -3PJR 8.4 ?
33 HHSearch 97.1661% -81 * C4 *1PJR - PCRA_GEOSE -
2 PsiBlast_PDB 95.9959% -83 - C4 -1PJR - PCRA_GEOSE -
3 PsiBlast_PDB 90.8964% -74 - C4 -2PJR 12.1 ?
27 PsiBlast_CBE 90.8741% -75 - C4 -4C2U 12.3 ?
8 PsiBlast_PDB 90.8741% -74 - C4 -4C2U 10.9 ?
26 PsiBlast_CBE 90.5341% -79 - C4 -4C30 8.5 ?
6 PsiBlast_PDB 90.5040% -78 - C4 -2IS6 - UVRD_ECOLI -
21 PsiBlast_CBE 90.3664% -74 - C4 -2PJR 10.9 ?
9 PsiBlast_PDB 90.2541% -75 - C4 -4C30 6.5 ?
7 PsiBlast_PDB 90.1939% -70 - C4 -4C2T 9.3 ?
23 PsiBlast_CBE 90.0539% -76 - C4 -4C2T - ? -
5 PsiBlast_PDB 90.0340% -81 - C4 -2IS2 - UVRD_ECOLI -
4 PsiBlast_PDB 89.8140% -80 - C4 -2IS1 3.3 UVRD_ECOLI
24 PsiBlast_CBE 89.6041% -78 - C4 -4C30 7.7 ?
25 PsiBlast_CBE 89.5941% -69 - C4 -4C30 1.9 ?
22 PsiBlast_CBE 87.0240% -78 - C4 -2IS1 6.5 UVRD_ECOLI
10 PsiBlast_PDB 84.9438% -73 - C4 -1UAA 9.5 REP_ECOLI
35 HHSearch 84.9339% -75 - C4 -1UAA 9.5 REP_ECOLI
28 PsiBlast_CBE 84.5638% -74 - C4 -1UAA 11.0 REP_ECOLI
31 PsiBlast_CBE 39.2358% -49 - C4 -2PJR 3.2 ?
32 PsiBlast_CBE 35.6358% -44 - C4 -2PJR 4.2 ?