@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1885: (2016-03-29 )
MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQELVEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKFDSKSKRSKGYSSKKKSTKKFDRKEKSSGGSRPMKGRTFADHQK

Atome Classification :

(70 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_7(3FHT)
DD19B_HUMAN
[Raw transfer]



ANP_B_12(3FHT)
DD19B_HUMAN
[Raw transfer]



ANP_A_7(3FHT)
DD19B_HUMAN
[Raw transfer]



ANP_A_3(3G0H)
DD19B_HUMAN
[Raw transfer]



ADP_A_3(3PEY)
DBP5_YEAST
[Raw transfer]



ADP_A_3(3PEY)
DBP5_YEAST
[Raw transfer]



ADP_A_3(3PEW)
DBP5_YEAST
[Raw transfer]



ADP_A_3(2OXC)
DDX20_HUMAN
[Raw transfer]



ADP_A_4(3FE2)
DDX5_HUMAN
[Raw transfer]



ANP_B_4(3B7G)
DDX20_HUMAN
[Raw transfer]



ADP_B_8(3FE2)
DDX5_HUMAN
[Raw transfer]



ANP_A_3(3B7G)
DDX20_HUMAN
[Raw transfer]



ADP_B_5(4PX9)
DDX3X_HUMAN
[Raw transfer]



ANP_A_3(3I5X)
MS116_YEAST
[Raw transfer]



ADP_C_6(4PX9)
DDX3X_HUMAN
[Raw transfer]



AMP_A_2(2I4I)
DDX3X_HUMAN
[Raw transfer]



ADP_A_4(4PX9)
DDX3X_HUMAN
[Raw transfer]



ADP_A_4(3RRM)
DBP5_YEAST
[Raw transfer]



8OP_B_6(3MWK)
?
[Raw transfer]



8OX_B_6(3MWL)
?
[Raw transfer]



ADP_B_4(2OXC)
DDX20_HUMAN
[Raw transfer]



AMP_A_3(3BER)
DDX47_HUMAN
[Raw transfer]



AMP_B_5(3IUY)
DDX53_HUMAN
[Raw transfer]



ADP_A_3(3EWS)
DD19B_HUMAN
[Raw transfer]



ADP_B_4(3FMO)
DD19B_HUMAN
[Raw transfer]



ADP_A_3(3RRN)
DBP5_YEAST
[Raw transfer]



AMP_B_6(2VSO)
IF4A_YEAST
[Raw transfer]



ADP_A_3(3DKP)
DDX52_HUMAN
[Raw transfer]



AMP_A_5(2VSX)
IF4A_YEAST
[Raw transfer]



AMP_A_3(3IUY)
DDX53_HUMAN
[Raw transfer]



ADP_A_3(2PL3)
DDX10_HUMAN
[Raw transfer]



AMP_B_6(2VSX)
IF4A_YEAST
[Raw transfer]



AMP_A_5(2VSO)
IF4A_YEAST
[Raw transfer]



AMP_B_9(2GXS)
?
[Raw transfer]



NACID_H_2(2J0Q)
IF4A3_HUMAN
[Raw transfer]
-
GOL_D_5(4D25)
?
[Raw transfer]



NACID_H_4(2DB3)
VASA1_DROME
[Raw transfer]
-
8OD_A_6(3NBF)
?
[Raw transfer]



8OD_C_11(3NBF)
?
[Raw transfer]



8OD_D_13(3NBF)
?
[Raw transfer]



8OD_B_8(3NBF)
?
[Raw transfer]



FLC_C_3(1T6N)
DX39B_HUMAN
[Raw transfer]



FLC_D_4(1T6N)
DX39B_HUMAN
[Raw transfer]



1PE_A_4(4BRW)
DHH1_YEAST
[Raw transfer]



NACID_E_1(2J0Q)
IF4A3_HUMAN
[Raw transfer]
-
TLA_B_4(1VEC)
DDX6_HUMAN
[Raw transfer]



NACID_E_4(2J0S)
IF4A3_HUMAN
[Raw transfer]
-
NACID_D_2(4D26)
?
[Raw transfer]
-
NACID_D_2(4D25)
?
[Raw transfer]
-
IPA_D_4(1XTI)
DX39B_HUMAN
[Raw transfer]



NACID_L_2(2HYI)
IF4A3_HUMAN
[Raw transfer]
-
IPA_D_4(1XTI)
DX39B_HUMAN
[Raw transfer]



NACID_G_3(2DB3)
VASA1_DROME
[Raw transfer]
-
NACID_F_9(3EX7)
IF4A3_HUMAN
[Raw transfer]
-
NACID_F_1(2HYI)
IF4A3_HUMAN
[Raw transfer]
-
NACID_J_10(3EX7)
IF4A3_HUMAN
[Raw transfer]
-
NACID_F_2(2DB3)
VASA1_DROME
[Raw transfer]
-
NACID_E_1(2DB3)
VASA1_DROME
[Raw transfer]
-
CHAIN_E_4(2XB2)
IF4A3_HUMAN
[Raw transfer]
-
NACID_E_1(2DB3)
VASA1_DROME
[Raw transfer]
-
NACID_B_2(3SQW)
MS116_YEAST
[Raw transfer]
-
123 HHSearch 92.1340% -98 - C4 -2I4I 5.9 DDX3X_HUMAN
1 PsiBlast_PDB 90.9643% -97 - C4 -1HV8 - H669_METJA -
122 HHSearch 90.8544% -91 - C4 -1HV8 - H669_METJA -
9 PsiBlast_PDB 90.6638% -98 - C4 -2I4I - DDX3X_HUMAN -
12 PsiBlast_PDB 89.7038% -89 - C4 -4PXA - DDX3X_HUMAN -
47 PsiBlast_CBE 88.5831% -96 - C4 -4LK2 - PRP5_YEAST -
25 PsiBlast_CBE 87.8539% -88 - C4 -4KBG - ? -
26 PsiBlast_CBE 87.5239% -94 - C4 -4KBF - ? -
16 PsiBlast_PDB 87.5233% -93 - C4 -1S2M - DHH1_YEAST -
31 PsiBlast_CBE 86.9936%-108 - C4 -2VSO 5.3 IF4A_YEAST
10 PsiBlast_PDB 86.8139% -86 - C4 -4KBF - ? -
3 PsiBlast_PDB 86.6337% -89 - C4 -2J0S 11.1 IF4A3_HUMAN
19 PsiBlast_PDB 86.4936%-106 - C4 -2VSO 5.2 IF4A_YEAST
115 HHSearch 86.4033% -94 - C4 -1S2M - DHH1_YEAST -
6 PsiBlast_PDB 86.1737% -87 - C4 -2HYI 10.7 IF4A3_HUMAN
24 PsiBlast_CBE 86.0537% -86 - C4 -2HYI 10.6 IF4A3_HUMAN
4 PsiBlast_PDB 86.0537% -86 - C4 -2XB2 8.6 IF4A3_HUMAN
116 HHSearch 85.9537% -77 - C4 -2DB3 11.2 VASA1_DROME
2 PsiBlast_PDB 85.8637% -87 - C4 -2J0Q 9.4 IF4A3_HUMAN
20 PsiBlast_PDB 85.8536%-104 - C4 -2VSX 4.9 IF4A_YEAST
30 PsiBlast_CBE 85.7936%-104 - C4 -2VSX 4.4 IF4A_YEAST
21 PsiBlast_CBE 85.7537% -86 - C4 -2J0Q 9.3 IF4A3_HUMAN
7 PsiBlast_PDB 85.7437% -87 - C4 -3EX7 11.5 IF4A3_HUMAN
14 PsiBlast_PDB 85.6634% -79 - C4 -4D25 11.9 ?
23 PsiBlast_CBE 85.4637% -85 - C4 -3EX7 9.6 IF4A3_HUMAN
15 PsiBlast_PDB 84.6934% -77 - C4 -4D26 12.3 ?
27 PsiBlast_CBE 83.8335% -79 - C4 -2DB3 11.3 VASA1_DROME
28 PsiBlast_CBE 83.8135% -80 - C4 -2DB3 11.2 VASA1_DROME
13 PsiBlast_PDB 83.3535% -79 - C4 -2DB3 11.2 VASA1_DROME
18 PsiBlast_PDB 83.3233% -90 - C4 -4BRW 2.4 DHH1_YEAST
119 HHSearch 83.3132% -81 - C4 -3I5X 9.6 MS116_YEAST
29 PsiBlast_CBE 82.8735% -80 - C4 -2DB3 10.2 VASA1_DROME
36 PsiBlast_CBE 82.0433%-100 - C4 -1XTI 3.8 DX39B_HUMAN
120 HHSearch 81.8332% -87 - C4 -3FHT 8.6 DD19B_HUMAN
124 HHSearch 81.2833% -82 - C4 -3PEY 8.1 DBP5_YEAST
125 HHSearch 81.1632% -78 - C4 -3SQW 11.4 MS116_YEAST
121 HHSearch 81.1132% -97 - C4 -1XTI 3.8 DX39B_HUMAN
40 PsiBlast_CBE 80.8231% -81 - C4 -3PEY 8.1 DBP5_YEAST
39 PsiBlast_CBE 80.6532% -82 - C4 -3PEW 8.1 DBP5_YEAST
46 PsiBlast_CBE 80.3831% -90 - C4 -3EWS 6.5 DD19B_HUMAN
45 PsiBlast_CBE 79.5231% -84 - C4 -3FHT 8.5 DD19B_HUMAN
37 PsiBlast_CBE 79.2732% -82 - C4 -3RRN 4.7 DBP5_YEAST
38 PsiBlast_CBE 78.2832% -87 - C4 -3RRM 5.7 DBP5_YEAST
44 PsiBlast_CBE 78.2331% -84 - C4 -3FHT 9.3 DD19B_HUMAN
43 PsiBlast_CBE 77.8231% -82 - C4 -3G0H 8.0 DD19B_HUMAN
57 PsiBlast_CBE 70.4339%-101 - C4 -3MWL 5.2 ?
54 PsiBlast_CBE 70.3039% -98 - C4 -3NBF 5.5 ?
50 PsiBlast_CBE 69.8439% -96 - C4 -2GXS 4.8 ?
67 PsiBlast_CBE 69.4836%-100 - C4 -4PX9 5.8 DDX3X_HUMAN
66 PsiBlast_CBE 69.4236%-100 - C4 -4PX9 5.3 DDX3X_HUMAN
56 PsiBlast_CBE 69.2439% -94 - C4 -3NBF 5.3 ?
65 PsiBlast_CBE 69.1436%-100 - C4 -4PX9 5.6 DDX3X_HUMAN
59 PsiBlast_CBE 69.0839% -95 - C4 -3MWK 4.1 ?
69 PsiBlast_CBE 68.9639% -99 - C4 -3FE2 5.2 DDX5_HUMAN
55 PsiBlast_CBE 68.8839% -91 - C4 -3NBF 5.9 ?
68 PsiBlast_CBE 68.7839% -96 - C4 -3FE2 6.4 DDX5_HUMAN
48 PsiBlast_CBE 68.6242% -93 - C4 -3BER 5.0 DDX47_HUMAN
53 PsiBlast_CBE 68.2739%-101 - C4 -3NBF 5.6 ?
71 PsiBlast_CBE 67.1435%-102 - C4 -1VEC 2.0 DDX6_HUMAN
74 PsiBlast_CBE 66.3034% -92 - C4 -1T6N 3.0 DX39B_HUMAN
75 PsiBlast_CBE 66.1634% -90 - C4 -1T6N 2.6 DX39B_HUMAN
83 PsiBlast_CBE 65.6433% -92 - C4 -2OXC 7.2 DDX20_HUMAN
80 PsiBlast_CBE 65.5833% -97 - C4 -3B7G 6.2 DDX20_HUMAN
81 PsiBlast_CBE 65.2633% -93 - C4 -3B7G 5.3 DDX20_HUMAN
82 PsiBlast_CBE 64.9233% -94 - C4 -2OXC 6.5 DDX20_HUMAN
73 PsiBlast_CBE 64.3835% -99 - C4 -2PL3 6.0 DDX10_HUMAN
79 PsiBlast_CBE 62.2235%-102 - C4 -3IUY 5.5 DDX53_HUMAN
93 PsiBlast_CBE 60.6731% -83 - C4 -3FMO 6.8 DD19B_HUMAN
78 PsiBlast_CBE 59.7235%-101 - C4 -3IUY 6.0 DDX53_HUMAN
94 PsiBlast_CBE 58.4132% -80 - C4 -3DKP 6.2 DDX52_HUMAN