@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1938: (2016-03-30 )
MRMIDIIEKKRDGHTLTTEEINFFIDGYVKGDIPDYQASSLAMAIYFQDMNDDERAALTMAMVNSGDMIDLSDIKGVKVDKHSTGGVGDTTTLVLAPLVAAVDVPVAKMSGRGLGHTGGTIDKLEAIDGFHVEIDEATFVKLVNENKVAVVGQSGNLTPADKKLYALRDVTGTVNSIPLIASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEALAHAMVRIGNNVGRNTMAIISDMNQPLGRAIGNALELQEAIDTLKGQGPKDLTELVLTLGSQMVVLANKAETLEEARALLIEAINSGAALEKFKTFIKNQGGDETVIDHPERLPQAQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADHVVSPTLIHKIITE

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

IUR_B_4(2WK6)
TYPH_HUMAN
[Raw transfer]



IUR_A_3(2WK6)
TYPH_HUMAN
[Raw transfer]



CMU_A_2(1UOU)
TYPH_HUMAN
[Raw transfer]



CMU_A_2(1UOU)
TYPH_HUMAN
[Raw transfer]



URA_B_7(1BRW)
PDP_GEOSE
[Raw transfer]



THM_A_2(3H5Q)
PDP_STAAC
[Raw transfer]



0NP_A_2(4EAD)
TYPH_ECOLI
[Raw transfer]
32 HHSearch 98.9399% -87 - C3 -3H5Q 4.0 PDP_STAAC
1 PsiBlast_PDB 98.8496% -89 - C3 -3H5Q - PDP_STAAC -
21 PsiBlast_CBE 90.9868% -86 - C3 -1BRW - PDP_GEOSE -
31 HHSearch 89.9767% -81 - C3 -1BRW - PDP_GEOSE -
2 PsiBlast_PDB 89.3768% -85 - C3 -1BRW 2.6 PDP_GEOSE
22 PsiBlast_CBE 80.9744% -77 - C3 -2DSJ - ? -
3 PsiBlast_PDB 80.7044% -71 - C3 -2DSJ - ? -
29 HHSearch 80.0245% -71 - C3 -2DSJ - ? -
9 PsiBlast_PDB 77.4644% -69 - C3 -4EAF - TYPH_ECOLI -
10 PsiBlast_PDB 77.3744% -66 - C3 -4LHM - TYPH_ECOLI -
8 PsiBlast_PDB 76.9844% -67 - C3 -4EAD 4.7 TYPH_ECOLI
5 PsiBlast_PDB 76.8544% -66 - C3 -1OTP - TYPH_ECOLI -
7 PsiBlast_PDB 76.8344% -66 - C3 -2TPT - TYPH_ECOLI -
4 PsiBlast_PDB 75.9144% -66 - C3 -1AZY - TYPH_ECOLI -
25 PsiBlast_CBE 74.5638% -67 - C3 -2WK6 3.8 TYPH_HUMAN
30 HHSearch 74.3537% -71 * C3 *1UOU 5.7 TYPH_HUMAN
24 PsiBlast_CBE 74.2238% -64 - C3 -2J0F - TYPH_HUMAN -
23 PsiBlast_CBE 74.2038% -65 - C3 -2J0F - TYPH_HUMAN -
11 PsiBlast_PDB 73.9238% -66 - C3 -2J0F - TYPH_HUMAN -
26 PsiBlast_CBE 73.7538% -64 - C3 -2WK5 - TYPH_HUMAN -
13 PsiBlast_PDB 73.6438% -67 - C3 -2WK6 3.9 TYPH_HUMAN
14 PsiBlast_PDB 72.8038% -72 - C3 -1UOU 5.7 TYPH_HUMAN