@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1965: (2016-03-30 )
MGKYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEKHPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLTRDMGAELGVMISASHNPVADNGIKFFGSDGFKLSDEQENEIEALLDQENPELPRPVGNDIVHYSDYFEGAQKYLSYLKSTVDVNFEGLKIVLDGANGSTSSLAPFLFGDLEADTETIGCSPDGYNINEKCGSTHPEKLAEKVVETESDFGLAFDGDGDRIIAVDENGQIVDGDQIMFIIGQEMHKNQELNNDMIVSTVMSNLGFYKALEQEGIKSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVMMDYNTTGDGLLTGIQLASVIKMTGKSLSELAGQMKKYPQSLINVRVTDKYRVEENVDVKEVMTKVEVEMNGEGRILVRPSGTEPLVRVMVEAATDEDAERFAQQIADVVQDKMGLDK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

G1P_X_2(1P5D)
ALGC_PSEAE
[Raw transfer]



G6P_X_2(1P5G)
ALGC_PSEAE
[Raw transfer]



M1P_X_2(1PCJ)
ALGC_PSEAE
[Raw transfer]



G1P_X_2(3BKQ)
ALGC_PSEAE
[Raw transfer]



R1P_X_2(2H4L)
ALGC_PSEAE
[Raw transfer]



X1P_X_3(2H5A)
ALGC_PSEAE
[Raw transfer]



M6P_X_3(1PCM)
ALGC_PSEAE
[Raw transfer]



G16_A_2(2FKF)
ALGC_PSEAE
[Raw transfer]



TLA_A_3(4MRQ)
ALGC_PSEAE
[Raw transfer]



TLA_X_3(1K2Y)
ALGC_PSEAE
[Raw transfer]
1 PsiBlast_PDB 99.5767% -79 - C1 -3PDK - GLMM_BACAN -
25 HHSearch 99.3867% -81 - C1 -3PDK - GLMM_BACAN -
21 PsiBlast_CBE 98.0367% -78 - C1 -3PDK - GLMM_BACAN -
2 PsiBlast_PDB 82.6238% -70 - C1 -3I3W - GLMM_FRATT -
27 HHSearch 81.8339% -68 - C1 -3I3W - GLMM_FRATT -
24 PsiBlast_CBE 81.2735% -60 - C1 -1WQA - ? -
3 PsiBlast_PDB 80.7935% -59 - C1 -1WQA - ? -
22 PsiBlast_CBE 80.5935% -60 - C1 -1WQA - ? -
23 PsiBlast_CBE 80.3535% -59 - C1 -1WQA - ? -
28 HHSearch 79.7134% -59 * C1 *1WQA - ? -
4 PsiBlast_PDB 77.2129% -63 - C1 -2F7L - ? -
26 HHSearch 76.2830% -63 - C1 -2F7L - ? -
30 HHSearch 73.7626% -58 - C1 -1P5D - ALGC_PSEAE -
8 PsiBlast_PDB 72.2727% -52 - C1 -2H4L 3.8 ALGC_PSEAE
13 PsiBlast_PDB 72.1727% -56 - C1 -1PCM 4.5 ALGC_PSEAE
9 PsiBlast_PDB 71.9927% -53 - C1 -2H5A 4.6 ALGC_PSEAE
6 PsiBlast_PDB 71.7428% -54 - C1 -4MRQ 3.7 ALGC_PSEAE
11 PsiBlast_PDB 71.6427% -55 - C1 -1P5G 5.0 ALGC_PSEAE
16 PsiBlast_PDB 71.6028% -53 - C1 -3BKQ 3.9 ALGC_PSEAE
7 PsiBlast_PDB 71.5227% -55 - C1 -1K2Y 2.9 ALGC_PSEAE