@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA2160: (2016-04-01 )
MIETFKAFVIDKDESGKVTPTFKQLSPTDLPKGDVLIKVHYSGINYKDALATQDHNAVVKSYPMIPGIDLAGTIVESEAPGFEKGEQVIVTSYDLGVSHYGGFSEYARVKSEWIIKLPDTLTLEESMIYGTAGYTAGLAIERLEKVGMNIEDGPVLVRGASGGVGTLAVLMLNELGYKVIASTGKQDVSDQLLELGAKEVIDRLPVEDDHKKPLASSTWQACVDPVGGEGINYVTKRLNHSGSIAVIGMTAGNTYTNSVFPHILRGVNILGIDSVFTAMKLRQRVWRRLAKDLKPENLHEIKQVITFDELPEQLNKVINHENKGRIVIDFGVDK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_A_5(1O8C)
ACUI_ECOLI
[Raw transfer]



NDP_B_6(1O8C)
ACUI_ECOLI
[Raw transfer]



NDP_D_8(1O8C)
ACUI_ECOLI
[Raw transfer]



NDP_C_7(1O8C)
ACUI_ECOLI
[Raw transfer]



NAP_A_3(3NX4)
?
[Raw transfer]



NAP_A_3(3NX4)
?
[Raw transfer]



EDO_A_4(4JXK)
?
[Raw transfer]



EDO_B_6(4JXK)
?
[Raw transfer]
2 PsiBlast_PDB 96.6946% -92 - C1 -1Y9E - YHFP_BACSU -
3 PsiBlast_PDB 91.0140% -91 - C1 -4JXK 2.9 ?
21 PsiBlast_CBE 90.6740% -90 - C1 -4JXK 2.6 ?
22 PsiBlast_CBE 86.6638% -92 - C1 -1O8C 7.5 ACUI_ECOLI
5 PsiBlast_PDB 86.6538% -91 - C1 -1O8C 8.7 ACUI_ECOLI
24 PsiBlast_CBE 86.3338% -91 - C1 -1O8C 8.3 ACUI_ECOLI
6 PsiBlast_PDB 85.5138% -86 - C1 -3NX4 7.9 ?
23 PsiBlast_CBE 85.0838% -89 - C1 -1O8C 8.8 ACUI_ECOLI
4 PsiBlast_PDB 84.9538% -93 - C1 -1O89 - ACUI_ECOLI -
28 HHSearch 84.7036% -95 - C1 -3NX4 7.9 ?
47 Fugue 84.5337% -93 - C1 -1O89 - ACUI_ECOLI -
30 HHSearch 71.9747% -42 - C1 -1TT7 - YHFP_BACSU -
1 PsiBlast_PDB 70.4146% -40 - C1 -1TT7 - YHFP_BACSU -
41 HHSearch 69.4723% -78 - C1 -3S2E - ? -
7 PsiBlast_PDB 65.6826% -68 - C1 -3UOG - ? -
39 HHSearch 64.5621% -78 - C1 -2EIH - ? -
9 PsiBlast_PDB 63.6024% -90 - C1 -1RJW - ADH3_GEOSE -
10 PsiBlast_PDB 63.4424% -90 - C1 -3PII - ADH3_GEOSE -
29 HHSearch 63.4018% -74 - C1 -1ZSY - MECR_HUMAN -
37 HHSearch 62.6024% -65 - C1 -3UOG - ? -