@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA2216: (2016-04-02 )
MFQITFKILNWIRPYKARMILGFSMSFLNAIFIALPIFLAAKIFNNVLSHKPIYMKDILNVVIIMVLLVIGRFITAYFKSKSHESIAYEMSAKERLDIGDKLKNVRLGYFNSHHSNELTTIVTTDLTFLENFAMKMVDIVVNGYILITVLILSLLVVSWQVSLLACIGVLLSFFAIQLLERKSRQNAPAYHNVQNQLVEKVLEVIRGIQVIKSFAKENTSLKSFNQAVNESKRINTKIEMQYIPFNLLHLLSLKVVSIMIVLVACLLYMNHSIDLPTLIMISIFSFVIFDSVENINSAAHVLEMIDMTIDDIEKIKNAPELDENGKNLTIKNENIAFQNVNFSYDDKQVIKNVNFEIPTQTSTAIIGPSGSGKSTLCHLLLRFYDIDDGNIRIDGVDIKDMTLSTLMSKISAVFQKVYLFNDTIENNILFGNPGATKEEIIRAAKQACCHDFIMSLPEGYQTMLNEKGSNLSGGEKQRISIARAILKDAPIIILDEATASIDPENEQLIQTAINELSKGKTVITIAHKLETIKNADQIIVLNEGEIIQKGSHDELIRKPGMYQDFIRIKSKSAGWKL

Atome Classification :

(62 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_7(1MV5)

[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ANP_A_3(4PL0)
MCJD_ECOLX
[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ATP_A_2(4K8O)

[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_A_3(3NHA)

[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ATP_C_12(2IXF)
TAP1_RAT
[Raw transfer]




ADP_A_2(3NHB)

[Raw transfer]




ATP_D_6(2IXE)

[Raw transfer]




ATP_A_2(2IXG)

[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ANP_B_6(4PL0)
MCJD_ECOLX
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]




AGS_A_3(4S0F)
?
[Raw transfer]




ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]




ATP_D_15(2IXF)

[Raw transfer]




ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]




ADP_A_2(5DGX)
?
[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_A_2(3NH9)

[Raw transfer]




ADP_A_3(1JJ7)

[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ANP_A_2(4AYW)
ABCBA_HUMAN
[Raw transfer]




AGS_B_4(4S0F)
?
[Raw transfer]




LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




2 PsiBlast_PDB 90.8132%-120 - C1 -4Q4A - Y288_THEMA -
3 PsiBlast_PDB 89.5932%-117 - C1 -4Q4H - Y288_THEMA -
1 PsiBlast_PDB 89.3932%-119 - C1 -3QF4 - Y288_THEMA -
4 PsiBlast_PDB 88.7632%-119 - C1 -4Q4J - Y288_THEMA -
7 PsiBlast_PDB 85.1830%-108 - C1 -2ONJ - Y1866_STAAM -
6 PsiBlast_PDB 84.3530%-108 - C1 -2HYD - Y1866_STAAM -
93 HHSearch 81.2826%-107 - C1 -3ZDQ - ABCBA_HUMAN -
91 HHSearch 80.3927% -91 - C1 -3B60 - MSBA_SALTY -
81 Fugue 79.8527% -89 - C1 -3B60 - MSBA_SALTY -
15 PsiBlast_PDB 79.2729%-105 - C1 -4F4C - PGP1_CAEEL -
94 HHSearch 78.1325%-107 - C1 -3WMG - ? -
84 Fugue 76.4726%-106 - C1 -4F4C - PGP1_CAEEL -
11 PsiBlast_PDB 76.1129% -95 - C1 -3B60 - MSBA_SALTY -
23 PsiBlast_CBE 71.8135%-102 - C1 -4S0F 4.6 ?
20 PsiBlast_PDB 70.6936%-113 - C1 -4RY2 - ? -
8 PsiBlast_PDB 70.6430%-107 - C1 -4A82 - Y1866_STAAM -
24 PsiBlast_CBE 70.3435%-103 - C1 -4AYX 5.7 ABCBA_HUMAN
27 PsiBlast_CBE 70.2735%-101 - C1 -4AYW 5.5 ABCBA_HUMAN
22 PsiBlast_CBE 70.1535%-101 - C1 -4S0F 1.6 ?
26 PsiBlast_CBE 69.5935%-101 - C1 -3ZDQ - ABCBA_HUMAN -
25 PsiBlast_CBE 68.4035% -98 - C1 -4AYT 5.9 ABCBA_HUMAN
40 PsiBlast_CBE 66.5043%-102 - C1 -2FGK 7.1 HLYBP_ECOLX
35 PsiBlast_CBE 66.4844%-100 - C1 -2FF7 6.4
107 HHSearch 66.2343%-100 * C1 *2FF7 6.4
43 PsiBlast_CBE 65.9443% -99 - C1 -2FGJ 6.7
38 PsiBlast_CBE 65.8443%-102 - C1 -2FGK 7.1
17 PsiBlast_PDB 65.5243% -92 - C1 -3NH9 6.2
19 PsiBlast_PDB 65.1343% -96 - C1 -3NHB 6.6
49 PsiBlast_CBE 65.1043%-100 - C1 -1XEF 7.0 HLYBP_ECOLX
44 PsiBlast_CBE 65.0343% -95 - C1 -2FGJ 6.8 HLYBP_ECOLX
18 PsiBlast_PDB 64.6543% -91 - C1 -3NHA 6.5
50 PsiBlast_CBE 64.6243% -97 - C1 -1XEF 7.1 HLYBP_ECOLX
34 PsiBlast_CBE 64.4543% -97 - C1 -2PMK 6.9
46 PsiBlast_CBE 64.4343% -95 - C1 -2FGJ 6.9 HLYBP_ECOLX
47 PsiBlast_CBE 64.2043%-100 - C1 -2FFA 6.2
51 PsiBlast_CBE 64.1043% -97 - C1 -1XEF 6.4 HLYBP_ECOLX
41 PsiBlast_CBE 64.0043% -98 - C1 -2FGK 7.4 HLYBP_ECOLX
39 PsiBlast_CBE 63.9243% -97 - C1 -2FGK 6.8 HLYBP_ECOLX
42 PsiBlast_CBE 63.8243% -97 - C1 -2FFB 6.2
48 PsiBlast_CBE 63.3243% -95 - C1 -1XEF 6.9
45 PsiBlast_CBE 63.1943% -95 - C1 -2FGJ 7.2 HLYBP_ECOLX
37 PsiBlast_CBE 62.6743% -95 - C1 -3B5J 6.7
66 PsiBlast_CBE 62.0133%-106 - C1 -2IXE 7.0
67 PsiBlast_CBE 61.9733% -94 - C1 -2IXE 7.5 TAP1_RAT
63 PsiBlast_CBE 60.9733% -99 - C1 -2IXF 7.7 TAP1_RAT
62 PsiBlast_CBE 60.8733%-102 - C1 -2IXF 7.8
69 PsiBlast_CBE 60.7932%-101 - C1 -4K8O 6.7
68 PsiBlast_CBE 60.6032% -97 - C1 -1JJ7 6.2
65 PsiBlast_CBE 60.2833%-100 - C1 -2IXF 7.5 TAP1_RAT
70 PsiBlast_CBE 59.8832% -96 - C1 -2IXG 6.9
64 PsiBlast_CBE 59.3733%-100 - C1 -2IXF 7.6 TAP1_RAT
99 HHSearch 58.7432% -84 - C1 -2IXE 7.7 TAP1_RAT
54 PsiBlast_CBE 57.9938% -83 - C1 -1MV5 3.9 LMRA_LACLA
32 PsiBlast_CBE 57.9741% -92 - C1 -5DGX 6.6 ?
101 HHSearch 57.7438% -91 - C1 -1MV5 6.1 LMRA_LACLA
55 PsiBlast_CBE 57.2238% -94 - C1 -1MV5 6.1 LMRA_LACLA
53 PsiBlast_CBE 56.5238% -88 - C1 -1MV5 5.3 LMRA_LACLA
52 PsiBlast_CBE 54.8638% -87 - C1 -1MV5 Error
71 PsiBlast_CBE 52.9433% -83 - C1 -4PL0 6.3 MCJD_ECOLX
72 PsiBlast_CBE 51.8433% -84 - C1 -4PL0 6.5 MCJD_ECOLX
75 PsiBlast_CBE 51.8334% -71 - C1 -4MKI 2.2 ECFA2_CALS4
76 PsiBlast_CBE 50.3534% -73 - C1 -4MKI 2.0 ECFA2_CALS4