@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA2278: (2016-04-02 )
MKKVINVVGAIIFSDNKILCAQRSEEMSLPLMWEFPGGKIEKNETEKEALIREIREEMKCDLIVGDKVITTEHEYDFGIVKLTTYKCTLNKELPTLTEHKSIEWLSINELDKLNWAPADIPAVNKIMTEG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GTP_A_3(3FFU)
?
[Raw transfer]



GTP_B_7(3FFU)
?
[Raw transfer]



DGT_A_3(3EF5)
?
[Raw transfer]



DGT_B_4(3EF5)
?
[Raw transfer]



ADP_A_3(3R03)
?
[Raw transfer]



ADP_A_3(3R03)
?
[Raw transfer]



GOL_A_3(3GRN)
?
[Raw transfer]



GOL_B_4(3GRN)
?
[Raw transfer]



HO_A_3(3EEU)
?
[Raw transfer]



HO_B_7(3EEU)
?
[Raw transfer]
104 HHSearch 95.6440%-108 - C2 -3GWY - ? -
1 PsiBlast_PDB 95.4742%-119 - C2 -3GWY - ? -
2 PsiBlast_PDB 90.5437% -89 - C2 -2RRK - NUDG_ECOLI -
103 HHSearch 90.1437% -87 - C2 -2RRK - NUDG_ECOLI -
4 PsiBlast_PDB 88.8339% -90 - C2 -3EES - ? -
22 PsiBlast_CBE 88.7039% -86 - C2 -3FFU 5.1 ?
6 PsiBlast_PDB 88.5839% -94 - C2 -3EF5 4.6 ?
7 PsiBlast_PDB 88.4339% -88 - C2 -3FFU 5.3 ?
23 PsiBlast_CBE 88.3339% -98 - C2 -3EF5 4.3 ?
5 PsiBlast_PDB 87.5939% -95 - C2 -3EEU 2.8 ?
24 PsiBlast_CBE 87.1939% -96 - C2 -3EEU 2.8 ?
105 HHSearch 83.0536% -77 - C2 -3EES - ? -
8 PsiBlast_PDB 79.9431% -74 - C2 -3R03 3.7 ?
109 HHSearch 78.8034% -81 - C2 -3HHJ - ? -
3 PsiBlast_PDB 77.6935% -70 - C2 -3HHJ - ? -
11 PsiBlast_PDB 76.4230% -72 - C1 -3A6T - MUTT_ECOLI -
115 HHSearch 76.2024% -80 - C2 -3I7U - ? -
107 HHSearch 75.2832% -57 - C2 -3R03 3.9 ?
21 PsiBlast_CBE 74.6635% -65 - C2 -3HHJ - ? -
10 PsiBlast_PDB 74.0430% -74 * C1 *3A6S - MUTT_ECOLI -