@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA2288: (2016-04-02 )
MKKIKKAIIPAAGLGTRFLPATKAMPKEMLPILDKPTIQYIVEEAARAGIEDIIIVTGRHKRAIEDHFDSQKELEMVLKEKGKSELLEKVQYSTELANIFYVRQKEQKGLGHAISSARQFIGNEPFAVLLGDDIVESEVPAVKQLIDVYEETGHSVIGVQEVPEADTHRYGIIDPLTKNGRQYEVKKFVEKPAQGTAPSNLAIMGRYVLTPEIFDYLKTQKEGAGNEIQLTDAIERMNNDNQVYAYDFEGERYDVGEKLGFVKTTIEYALKDDSMREELTRFIKALGL

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GUD_A_13(2PA4)
?
[Raw transfer]



UPG_A_5(3JUK)
?
[Raw transfer]



GUD_D_16(2PA4)
?
[Raw transfer]



UPG_A_5(3JUK)
?
[Raw transfer]



GUD_C_15(2PA4)
?
[Raw transfer]



GUD_A_13(2PA4)
?
[Raw transfer]



UPG_D_17(3JUK)
?
[Raw transfer]



GUD_B_14(2PA4)
?
[Raw transfer]



UPG_B_9(3JUK)
?
[Raw transfer]



UPG_C_13(3JUK)
?
[Raw transfer]



TTP_E_5(2GGQ)
?
[Raw transfer]



THM_A_15(1H5R)
RMLA1_ECOLI
[Raw transfer]
26 PsiBlast_CBE 94.9551% -87 - C1 -2UX8 - ? -
27 PsiBlast_CBE 92.8651% -88 - C1 -2UX8 - ? -
25 PsiBlast_CBE 92.8251% -89 - C1 -2UX8 - ? -
24 PsiBlast_CBE 92.7751% -90 - C1 -2UX8 - ? -
22 PsiBlast_CBE 92.4951% -86 * C1 *2UX8 - ? -
23 PsiBlast_CBE 91.4151% -87 - C1 -2UX8 - ? -
70 HHSearch 87.9238% -81 - C1 -2PA4 5.7 ?
2 PsiBlast_PDB 87.4147% -83 - C1 -3JUK 7.8 ?
28 PsiBlast_CBE 86.7647% -85 - C1 -3JUK 8.0 ?
71 HHSearch 86.7147% -85 - C1 -3JUK 7.8 ?
1 PsiBlast_PDB 85.6647% -83 - C1 -3JUJ - ? -
29 PsiBlast_CBE 85.5747% -87 - C1 -3JUK 8.1 ?
21 PsiBlast_CBE 85.2351%-100 - C1 -2UX8 - ? -
33 PsiBlast_CBE 85.1038% -84 - C1 -2PA4 4.5 ?
3 PsiBlast_PDB 84.9538% -87 - C1 -2PA4 5.7 ?
32 PsiBlast_CBE 84.7638% -80 - C1 -2PA4 6.4 ?
31 PsiBlast_CBE 84.1538% -87 - C1 -2PA4 6.4 ?
30 PsiBlast_CBE 83.7747% -84 - C1 -3JUK 7.6 ?
9 PsiBlast_PDB 65.6230% -73 - C1 -1IIM - RMLA_SALTY -
12 PsiBlast_PDB 65.0730% -74 - C1 -1MP4 - RMLA_SALTY -
5 PsiBlast_PDB 62.5431% -71 - C1 -2GGQ 5.6 ?