@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA2312: (2016-04-03 )
MTKIMFFGTRDYEKEMALNWGKKNNVEVTTSKELLSSATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQTHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_B_4(4XKJ)
?
[Raw transfer]



NAD_A_3(4XKJ)
?
[Raw transfer]



NAD_E_5(1J49)
LDHD_LACDA
[Raw transfer]



NAD_A_4(1DXY)
DHD2_LACPA
[Raw transfer]



NAD_A_4(1DXY)
DHD2_LACPA
[Raw transfer]



NAD_D_4(1J49)
LDHD_LACDA
[Raw transfer]



NAD_A_3(4PRL)
?
[Raw transfer]



NAD_B_5(2DLD)
LDHD_LACHE
[Raw transfer]



GOL_A_9(3WWY)
?
[Raw transfer]



GOL_A_9(3WWY)
?
[Raw transfer]



NAD_A_3(2DLD)
LDHD_LACHE
[Raw transfer]



GOL_B_14(3WWY)
?
[Raw transfer]



NAD_B_4(4PRL)
?
[Raw transfer]



GOL_A_3(3K5P)
?
[Raw transfer]



NAD_A_4(1DXY)
?
[Raw transfer]



COI_A_5(1DXY)
DHD2_LACPA
[Raw transfer]
3 PsiBlast_PDB 91.7937%-108 - C1 -4XKJ 5.3 ?
23 PsiBlast_CBE 90.5837%-111 - C1 -4XKJ 3.9 ?
70 HHSearch 89.8830%-103 - C1 -3WWZ - ? -
30 PsiBlast_CBE 89.8434%-105 - C1 -3WWY 2.3 ?
1 PsiBlast_PDB 89.6236%-107 - C1 -2YQ4 - ? -
69 HHSearch 89.3533%-110 - C1 -1J4A - LDHD_LACDA -
24 PsiBlast_CBE 88.8936%-113 - C1 -4PRL 7.6 ?
22 PsiBlast_CBE 88.8236%-109 - C1 -2YQ5 - ? -
4 PsiBlast_PDB 88.6336%-114 - C1 -4PRK - ? -
66 HHSearch 88.4732%-103 - C1 -3WWY 3.1 ?
11 PsiBlast_PDB 88.4032%-105 - C1 -1XDW - ? -
5 PsiBlast_PDB 88.2136%-111 - C1 -4PRL 7.9 ?
16 PsiBlast_PDB 88.0434%-105 - C1 -3WWY 3.1 ?
9 PsiBlast_PDB 87.9933%-110 - C1 -1J4A - LDHD_LACDA -
8 PsiBlast_PDB 87.8833%-111 - C1 -1J49 5.5 LDHD_LACDA
21 PsiBlast_CBE 87.7236%-106 - C1 -2YQ5 - ? -
26 PsiBlast_CBE 87.6033%-108 * C1 *1J49 8.9 LDHD_LACDA
27 PsiBlast_CBE 87.4633%-111 - C1 -1J4A - LDHD_LACDA -
2 PsiBlast_PDB 86.8536%-104 - C1 -2YQ5 - ? -
28 PsiBlast_CBE 86.5633%-107 - C1 -1J4A - LDHD_LACDA -
25 PsiBlast_CBE 85.7533%-109 - C1 -2DLD 5.3 LDHD_LACHE
6 PsiBlast_PDB 85.4733%-114 - C1 -2DLD 5.3 LDHD_LACHE
7 PsiBlast_PDB 83.4132%-107 - C1 -1DXY 9.2 DHD2_LACPA
65 HHSearch 82.9432%-102 - C1 -1DXY 9.2 DHD2_LACPA
17 PsiBlast_PDB 61.9730%-112 - C1 -3K5P 2.4 ?
64 Fugue 38.2932% -77 - C1 -1DXY Error ?