@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA2393: (2016-04-03 )
MLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTHQLDAVIPHLTYLAHEDTLIILAQNGYGQLEHIPFKNVCQAVVYISGQKKGDVVTHFRDYQLRIQDNALTRQFRDLVQDSQIDIVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGLNFSEQTVDTIMTIYQGYPDEMGTSMYYDIVHQQPLEVEAIQGFIYRRAREHNLDTPYLDTIYSFLRAYQQNM

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_B_4(4S3M)
?
[Raw transfer]




NAP_A_3(4S3M)
?
[Raw transfer]




NDP_B_4(4YCA)
?
[Raw transfer]




NDP_A_3(4YCA)
?
[Raw transfer]




NAP_A_2(4OL9)
PANE_MYCTU
[Raw transfer]




21 PsiBlast_CBE 98.68100%-158 - C2 -4YCA 11.0 ?
2 PsiBlast_PDB 98.01100%-161 - C2 -4YCA 10.7 ?
1 PsiBlast_PDB 97.86100%-159 - C2 -3G17 - ? -
3 PsiBlast_PDB 95.0499%-165 - C2 -4S3M 10.1 ?
22 PsiBlast_CBE 94.6699%-168 - C2 -4S3M 9.9 ?
4 PsiBlast_PDB 74.3831%-123 - C2 -4OL9 11.3 PANE_MYCTU
15 PsiBlast_PDB 66.5420%-126 - C2 -3GHY - ? -
14 PsiBlast_PDB 64.6722%-110 - C2 -3I83 - ? -
40 HHSearch 64.6321%-110 - C2 -3GHY - ? -
38 HHSearch 64.2219%-117 - C2 -3I83 - ? -
41 HHSearch 64.1018%-119 - C2 -3HWR - ? -
34 HHSearch 61.4020%-123 - C2 -2EW2 - ? -
55 Fugue 59.3520%-114 - C2 -1KS9 - PANE_ECOLI -
12 PsiBlast_PDB 59.3324%-127 - C2 -3HN2 - ? -
39 HHSearch 58.7521%-106 - C2 -1KS9 - PANE_ECOLI -
8 PsiBlast_PDB 58.3125%-129 - C2 -1KS9 - PANE_ECOLI -
11 PsiBlast_PDB 58.2821%-113 - C2 -3WFJ - ? -
35 HHSearch 58.1920%-111 - C2 -3WFI - ? -
7 PsiBlast_PDB 58.0725%-128 - C2 -1YON - PANE_ECOLI -
5 PsiBlast_PDB 58.0125%-126 - C2 -2OFP - PANE_ECOLI -