@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA2413: (2016-04-03 )
MKLNTSNSPFTEKQVTEINNLLQTLTESQQQWLSGFLLANSNDTTSDSNQQQLETEVWQQSQISEEQATSTTYMLQNKEPHIEANQRHVTVLYGSESGNAMRLAEIFSERLSDIGHQVVLMSMDEYDTTNIAQLEDLFIITSTHGEGEPPDNAWDFFEFLEDDNAPNLNHVRYSVLALGDQTYEFFCQAGKDVDALLENLGAERICKRVDCDIDYEEDAEKWMADIINMIDTTSEGIQSESVISESIKSAKEKKYSKLNPYQAEVLANINLNGTDSNKETRHIEFLLDDFSESYEPGDCIVALPQNDPELVEKLISMLGWDPQSPVPINDRGDTVPIVEALTSHFEFTKLTLPLLKNADIYFDNEELSERIQDESWAREYVINRDFIDLITDFPTIELQPENMYQILRKLPPREYSISSSFMATPDEVHITVGTVRYQAHGRERKGVCSVHFAERIKPGDIVPIYLKKNPNFKFPMKQDIPVIMIGPGTGIAPFRAYLQEREELGMTGKTWLFFGDQHRSSDFLYEEEIEEWLENGNLTRVDLAFSRDQEHKEYVQHRIMEESERFNEWIEQGAAIYICGDEKCMAKDVHQAIKDVLVKERHISQEEAELLLRQMKQQQRYQRDVY

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_B_5(1DDG)
CYSJ_ECOLI
[Raw transfer]




FAD_A_2(1DDI)
CYSJ_ECOLI
[Raw transfer]




FAD_A_4(1DDG)
CYSJ_ECOLI
[Raw transfer]




FAD_A_4(1DDG)
CYSJ_ECOLI
[Raw transfer]




FAD_A_3(3VO1)
?
[Raw transfer]




FAD_B_4(3VO1)
?
[Raw transfer]




FAD_B_4(3VO2)
?
[Raw transfer]




FAD_A_3(3VO2)
?
[Raw transfer]




NAP_G_7(1J9Z)
NCPR_RAT
[Raw transfer]




FAD_A_2(3LVB)
?
[Raw transfer]




NAP_F_6(1JA0)
NCPR_RAT
[Raw transfer]




FAD_A_2(1JB9)
?
[Raw transfer]




FAD_B_2(1F20)

[Raw transfer]




NAP_G_7(1JA0)
NCPR_RAT
[Raw transfer]




FAD_D_4(1QGA)
FENR1_PEA
[Raw transfer]




FMN_A_2(3OJX)
NCPR_RAT
[Raw transfer]




FMN_A_2(3OJW)
NCPR_RAT
[Raw transfer]




FAD_F_6(1QGA)
FENR1_PEA
[Raw transfer]




FAD_D_4(1QFZ)
FENR1_PEA
[Raw transfer]




FAD_F_6(1QFZ)
FENR1_PEA
[Raw transfer]




NAP_A_3(3QFS)
NCPR_HUMAN
[Raw transfer]




NAP_A_3(3QFS)
NCPR_HUMAN
[Raw transfer]




NAP_A_4(3OJX)
NCPR_RAT
[Raw transfer]




FAD_D_4(1QFY)
FENR1_PEA
[Raw transfer]




NAP_A_5(3QFC)
NCPR_HUMAN
[Raw transfer]




FAD_F_6(1QFY)
FENR1_PEA
[Raw transfer]




NAP_A_3(3QFT)
NCPR_HUMAN
[Raw transfer]




NAP_A_5(3QE2)
NCPR_HUMAN
[Raw transfer]




NAP_A_5(3QE2)
NCPR_HUMAN
[Raw transfer]




NAP_A_5(3QFR)
NCPR_HUMAN
[Raw transfer]




GOL_B_11(2EIX)
?
[Raw transfer]




FMN_F_6(1J9Z)
NCPR_RAT
[Raw transfer]




101 Fugue 85.3131% -80 - C2 -1JA1 - NCPR_RAT -
14 PsiBlast_PDB 85.0829% -90 - C2 -3FJO - NCPR_HUMAN (first) -
77 HHSearch 83.6231% -80 - C2 -3QE2 7.0 NCPR_HUMAN
15 PsiBlast_PDB 80.9927% -80 * C2 *1TLL - NOS1_RAT -
78 HHSearch 80.9530% -77 - C2 -1TLL - NOS1_RAT -
4 PsiBlast_PDB 77.9331% -83 - C2 -3WKT - NCPR_RAT -
9 PsiBlast_PDB 77.6431% -78 - C2 -1J9Z 8.2 NCPR_RAT
3 PsiBlast_PDB 77.4431% -80 - C2 -3ES9 - NCPR_RAT -
13 PsiBlast_PDB 77.4330% -78 - C2 -1JA1 - NCPR_RAT -
12 PsiBlast_PDB 77.1830% -77 - C2 -3QFC 7.6 NCPR_HUMAN
10 PsiBlast_PDB 76.9430% -77 - C2 -3QE2 7.0 NCPR_HUMAN
83 HHSearch 76.8842% -86 - C2 -1DDG 11.3 CYSJ_ECOLI
6 PsiBlast_PDB 76.5531% -76 - C2 -3OJW 9.1 NCPR_RAT
79 HHSearch 76.4629% -70 - C2 -2BPO - NCPR_YEAST -
7 PsiBlast_PDB 76.4031% -74 - C2 -3OJX 9.3 NCPR_RAT
1 PsiBlast_PDB 76.2541% -86 - C2 -1DDG 11.3 CYSJ_ECOLI
25 PsiBlast_CBE 76.1231% -74 - C2 -1J9Z 7.2 NCPR_RAT
11 PsiBlast_PDB 75.3530% -74 - C2 -3QFR 6.5 NCPR_HUMAN
5 PsiBlast_PDB 74.5130% -78 - C2 -1AMO - NCPR_RAT -
21 PsiBlast_CBE 74.4441% -84 - C2 -1DDG 12.1 CYSJ_ECOLI
2 PsiBlast_PDB 74.1441% -81 - C2 -1DDI 12.3 CYSJ_ECOLI
8 PsiBlast_PDB 73.1331% -76 - C2 -1JA0 8.1 NCPR_RAT
80 HHSearch 73.0732% -79 - C2 -3QFS 7.2 NCPR_HUMAN
16 PsiBlast_PDB 70.9231% -82 - C2 -3QFS 7.2 NCPR_HUMAN
17 PsiBlast_PDB 68.9431% -82 - C2 -3QFT 7.6 NCPR_HUMAN
24 PsiBlast_CBE 66.8631% -75 - C2 -1JA0 7.5 NCPR_RAT
82 HHSearch 61.9430% -71 - C2 -1F20 11.2
30 PsiBlast_CBE 48.3432% -81 - C2 -3VO1 11.1 ?
27 PsiBlast_CBE 45.9231% -78 - C2 -3VO2 12.3 ?
29 PsiBlast_CBE 45.6832% -79 - C2 -3VO1 12.0 ?
28 PsiBlast_CBE 44.5931% -77 - C2 -3VO2 12.3 ?
32 PsiBlast_CBE 43.0132% -82 - C2 -1JB9 7.3 ?
31 PsiBlast_CBE 42.4132% -83 - C2 -3LVB 7.5 ?
38 PsiBlast_CBE 41.4932% -80 - C2 -1QGA 10.3 FENR1_PEA
36 PsiBlast_CBE 40.1432% -80 - C2 -1QFY 10.1 FENR1_PEA
33 PsiBlast_CBE 40.1032% -77 - C2 -1QFZ 10.0 FENR1_PEA
35 PsiBlast_CBE 40.0632% -79 - C2 -1QFY 9.8 FENR1_PEA
34 PsiBlast_CBE 40.0132% -81 - C2 -1QFZ 10.2 FENR1_PEA
37 PsiBlast_CBE 37.5732% -77 - C2 -1QGA 10.0 FENR1_PEA