@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA2420: (2016-04-04 )
MLSVKKATKFAVANLIIVSTVFSSVTPAIAQSDKSSKDESFAVGNTKNPKNVIFLVGDGMGPSFNTAYRYYKNDSHAKEMTPTAFDSYLKGTNRTYSNDPKQNITDSAAGGTAFSSGHKTYNGAIGVDSNKQKVKTVLERAKEKGKSTGLVSTAELTDATPAAYAAHVTSRDDKNEIAKQFYKDKINGKHKVDVLLGGGAKYFGKSNGNLDKKFKKDGYDLATNSKDLSKSDKDKVLGLFADKNMPLAIDASKDEPSLADMQQSALSKLERNKKGFFLMVEGASIDKSAHSNDITGVMSEMEGFEKAFDDAIQYAKKHKDTLVVATADHSTGGLTIGKDKGYEWNPQPIKSMKHSGSYMTEKMAKGEDPEKVINEGYGFEFSQDDMKKVKKENKKLQKLLKKEKDEKSADVEKQTKALQHAIQKPVNDKSYTGWTSDGHTGEDVNTYAYGPRSESFSGNIENTESAKIIFDIFK

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PAE_A_15(1EW8)
PPB_ECOLI
[Raw transfer]



PAE_B_16(1EW8)
PPB_ECOLI
[Raw transfer]



2PG_A_4(1O98)
GPMI_GEOSE
[Raw transfer]



GOL_B_12(4YR1)
PPB_ECOLI
[Raw transfer]



KOP_A_10(3Q3Q)
ALPH_SPHSX
[Raw transfer]



GOL_A_7(4YR1)
PPB_ECOLI
[Raw transfer]



MMQ_A_13(1EW9)
PPB_ECOLI
[Raw transfer]



AF3_B_8(1KHJ)
PPB_ECOLI
[Raw transfer]



MMQ_B_14(1EW9)
PPB_ECOLI
[Raw transfer]



AF3_B_10(1KH5)
PPB_ECOLI
[Raw transfer]



AF3_A_9(1KH5)
PPB_ECOLI
[Raw transfer]



AF3_A_7(1KHJ)
PPB_ECOLI
[Raw transfer]



CHAIN_C_3(3DPC)
PPB_ECOLI
[Raw transfer]
-
EDO_A_21(3E2D)
?
[Raw transfer]
1 PsiBlast_PDB 90.9238% -30 - C7 -3A52 - ? -
21 PsiBlast_CBE 90.9138% -32 - C7 -3A52 - ? -
103 HHSearch 86.2839% -22 - C7 -3TG0 - PPB_ECOLI -
125 Fugue 86.0833% -22 - C7 -3E2D - ? -
101 HHSearch 85.1332% -19 - C7 -3E2D - ? -
102 HHSearch 84.7231% -19 - C7 -3WBH - ? -
104 HHSearch 83.5935% -17 - C7 -2X98 - ? -
106 HHSearch 83.5331% -15 - C7 -1ZED - PPB1_HUMAN -
3 PsiBlast_PDB 82.0833% -7 - C7 -2X98 - ? -
24 PsiBlast_CBE 81.9336% -31 - C7 -1KH9 - PPB_ECOLI -
7 PsiBlast_PDB 81.8436% -28 - C7 -1ALK - PPB_ECOLI -
56 PsiBlast_CBE 81.8336% -31 - C7 -1ANJ - PPB_ECOLI -
25 PsiBlast_CBE 81.7836% -27 - C7 -1KH5 2.7 PPB_ECOLI
57 PsiBlast_CBE 81.6835% -26 - C7 -1KHN - PPB_ECOLI -
61 PsiBlast_CBE 81.6635% -29 - C7 -1KHK - PPB_ECOLI -
63 PsiBlast_CBE 81.6535% -28 - C7 -1KHJ 2.7 PPB_ECOLI
27 PsiBlast_CBE 81.5136% -28 - C7 -1ALK - PPB_ECOLI -
64 PsiBlast_CBE 81.4635% -27 - C7 -1KHJ 2.6 PPB_ECOLI
43 PsiBlast_CBE 81.4236% -31 - C7 -1ELZ - PPB_ECOLI -
33 PsiBlast_CBE 81.4136% -28 - C7 -1Y6V - PPB_ECOLI -
34 PsiBlast_CBE 81.2436% -32 - C7 -1EW9 2.7 PPB_ECOLI
5 PsiBlast_PDB 81.1936% -26 - C7 -1KH5 2.8 PPB_ECOLI
12 PsiBlast_PDB 80.9136% -29 - C7 -1EW8 3.2 PPB_ECOLI
92 PsiBlast_CBE 80.8736% -27 - C7 -4YR1 3.0 PPB_ECOLI
13 PsiBlast_PDB 80.8536% -29 - C7 -1EW9 2.5 PPB_ECOLI
91 PsiBlast_CBE 80.4236% -29 * C7 *4YR1 3.0 PPB_ECOLI
35 PsiBlast_CBE 80.3336% -32 - C7 -1EW8 3.7 PPB_ECOLI
66 PsiBlast_CBE 80.3136% -36 - C7 -3DPC 2.9 PPB_ECOLI
86 PsiBlast_CBE 75.3235% -28 - C7 -3E2D 2.8 ?